Laboratory of Bioinformatics Analyses for Genomics and Metabolism
The version 3.15.2 of the platform is now deployed: The DBCAN workflow has been updated to use dbCAN v2. MicroScope now includes some metadata from a recent article (see Joshua S. Madin et al., A synthesis of bacterial and archaeal
In order to optimize data management in MicroScope we have decided to proceed to several changes. First we have decided to remove obsolete genome assemblies from MicroScope. This step concerns genomes from GenBank which have been deleted from the database
The version 3.15.1 of the platform is now deployed: In this version, we introduced management of deleted synteny results for genomes that are no longer consulted. More on this soon. We also fixed various bugs. Please report us any bugs
The version v3.15.0 of the platform is now deployed. The main novelty in this version is that we now use KEGG Orthology (KO) computed by KOfamScan to map genes to EC numbers and KEGG pathways instead of PRIAM results (see
The version v3.14.3 of the platform is now deployed: The Access Rights Managment page now uses the new genome selector. A bug prevented SwissProt/TrEMBL annotations to be displayed on the gene info page. This is now corrected. Links to the
MicroScope services (integration of new genomic data) will be closed from December 19th 2020 to January 4th 2021. User support will also be very limited during this period. The LABGeM team wishes you a happy holiday season.
Since 2004, MicroScope has offered a genome analysis service to a large community of microbiologists. The current resources of MicroScope are largely provided by the CEA and the CNRS through the funding of permanent staff and IT resources with the
After the cancellation of 2020 trainings due to the Covid-19 crisis, we are pleased to inform you about MicroScope professional training courses in 2021. Two sessions of the «Annotation and analysis of prokaryotic genomes using the MicroScope platform» course are planned
This year, we worked on improving the genome integration request service. The main new functionality is that the request to update the assembly of a genome, previously transmitted by e-mail, can now be made online using the Delivery of Service Management page
Two novel interactive graphs have been added to the RNA-seq analysis page to summarize, control and explore more deeply the Differentially Expressed Gene (DEG) results. A colored horizontal bar chart displays global statistics for the selected comparison(s). A MA-plot displays
Description du poste Localisé au CEA/Genoscope, un centre de recherche scientifique dédié à la génomique environnementale, le Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM, UMR8030, https://labgem.genoscope.cns.fr) s’intéresse à l’analyse et l’exploration de la diversité des microorganismes et
Description du poste Localisé au CEA/Genoscope, un centre de recherche scientifique dédié à la génomique environnementale, le Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM, UMR8030, https://labgem.genoscope.cns.fr) s’intéresse à l’analyse et l’exploration de la diversité des microorganismes et