Laboratory of Bioinformatics Analyses for Genomics and Metabolism
A number of users have reported that they can’t use the genome selector when requesting integration of GenBank’s genomes (and thus can’t submit the delivery of service). To the best of our knowledge, this happens only when using Chrome-based browsers
A new functionality called “Genome Cart” has been integrated into the platform. It allows you to save one or more genome selection that are integrated in the selection component and can then be used in the different tools of the
To improve usability of the Genome Browser, the navigation bar has been redesigned: it is now placed above the genome map and has a reduced number of buttons. We also worked on the circular visualization of genomes in the platform.
Dear MicroScope users, MicroScope and LABGeM’s website will be unavailable starting Friday September 2th around 5pm CEST. Everything should be back to normal for Monday September 5th 9am CEST. This is needed for an maintenance operation on the electrical network
The version 3.16.0 of the platform is now deployed: The COG dataset ha been removed: this was needed because the version used in MicroScope was quite old (dating back to 2009). Users are encouraged to use the EggNOG classification tool.
Dear MicroScope users, You may have noticed that MicroScope was unavailable for several hours between yesterday and this morning (CEST). This is due to an unexpected problem on our SQL server. We are working on this problem and hope that
Dear MicroScope users, Microscope will be unavailable for a few minutes this evening, Monday July 18th around 5pm CEST . MicroScope will be off-line Friday July 22th 12pm CEST for about one hour. This is needed for adatabase maintenance operation.
We are pleased to inform you that there are places available for the next session of the course «Annotation and analysis of prokaryotic genomes using the MicroScope platform» which will take place from November 21 to 25, 2022. This course
We have decided to remove assemblies which have been deleted from the GenBank database (see the list here). If you need these genomes for your analyses, you can request the integration of their current assembly version from this page.
The version 3.15.4 of the platform is now deployed. The main novelty of this version is the introduction of Genome Carts. They are integrated in the Sequence/Organism selector so they can be selected quickly. This feature replaces the list of
Contexte : Le Genoscope (CEA, Institut de Biologie François Jacob) est un centre de référence français en génomique environnementale qui réalise des analyses à grande échelle pour la compréhension des écosystèmes, notamment dans le contexte des grands changements environnementaux. Son
Analyse pangénomique des voies métaboliques chez les archées Description Lieu : Vous serez accueilli au sein du Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM, UMR8030, https://labgem.genoscope.cns.fr) du Genoscope (Institut de biologie François Jacob – CEA – Evry),