Laboratory of Bioinformatics Analyses for Genomics and Metabolism
We have decided to remove assemblies which have been deleted from the GenBank database (see the list here). If you need these genomes for your analyses, you can request the integration of their current assembly version from this page.
The version 3.15.4 of the platform is now deployed. The main novelty of this version is the introduction of Genome Carts. They are integrated in the Sequence/Organism selector so they can be selected quickly. This feature replaces the list of
Dear MicroScope users, MicroScope and LABGeM’s website will be unavailable starting Friday March 25th around 5pm CEST. Everything should be back to normal for Monday March 28th 9am CEST. This is needed for an maintenance operation on the electrical network
Dear MicroScope users, As you may have noticed, MicroScope was unavailable or extremely slow between Thursday March 17th around 5pm CEST and Friday March 18th 10am CEST. This is due to an unexpected failure in our IT infrastructure. No data
Dear MicroScope users, You may have noticed an unusual number of problems in some tools recently (generally ending with a big red error message). This is due to an update in our SQL server that turned on a more strict
The version v3.15.3 of the platform is now deployed: As mentioned in the last newsletter, you will be asked to update your personal information when upon login. Moreover you will be asked to update those information every year (see the
Dear MicroScope users, MicroScope will be off-line from Friday December 17th 12pm CEST to Monday December 20th around 2pm CEST. This long shut-down is needed to update several components of our IT infrastructure. Services opened the week before might take
In the spring of 2020, we conducted a satisfaction survey with over 1700 users of the MicroScope platform. With this survey we wanted to know more about the profile of our user community and their use of the platform for
In order to improve the selection of genomes, MicroScope 3.15.2 introduced the possibility to select genomes based on a subset of species-level metadata published in Joshua S. Madin et al., A synthesis of bacterial and archaeal phenotypic trait data. Sci
In order to improve the processing time of the genome analysis, we chose to replace NCBI blast with Diamond version 2 to perform protein sequence alignments (i.e. synteny computations and alignments against UniProt). Internal tests showed that the results obtained
ModelOmics : approches en génomique environnementale pour la modélisation du métabolisme de communautés microbiennes et l’étude de son évolution dans les écosystèmes Mots-clés : modélisation, biologie computationnelle, biologie des systèmes, génomique environnementale, métabolisme microbien dans les écosystèmes Type de contrat
Description du poste Localisé au CEA/Genoscope, un centre de recherche scientifique dédié à la génomique environnementale, le Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM, UMR8030, https://labgem.genoscope.cns.fr) s’intéresse à l’analyse et l’exploration de la diversité des microorganismes et