Laboratory of Bioinformatics Analyses for Genomics and Metabolism
Dear MicroScope users, MicroScope will be off-line from Friday December 17th 12pm CEST to Monday December 20th around 2pm CEST. This long shut-down is needed to update several components of our IT infrastructure. Services opened the week before might take
In the spring of 2020, we conducted a satisfaction survey with over 1700 users of the MicroScope platform. With this survey we wanted to know more about the profile of our user community and their use of the platform for
In order to improve the selection of genomes, MicroScope 3.15.2 introduced the possibility to select genomes based on a subset of species-level metadata published in Joshua S. Madin et al., A synthesis of bacterial and archaeal phenotypic trait data. Sci
In order to improve the processing time of the genome analysis, we chose to replace NCBI blast with Diamond version 2 to perform protein sequence alignments (i.e. synteny computations and alignments against UniProt). Internal tests showed that the results obtained
We are pleased to inform you about MicroScope professional training courses in 2022. Two sessions of the «Annotation and analysis of prokaryotic genomes using the MicroScope platform» course are planned at the University of Evry: Monday 14th March 2022 – Friday 18th March
Dear MicroScope users, Due to a maintenance operation on several servers at Genoscope, MicroScope will be offline from Friday November 19th afternoon (5 pm CEST time) to Sunday November 21st (the precise time is not known yet). We apologize for
Dear MicroScope Users, We recently discovered that some gene fissions (shown on the Gene Fusion/Fission page) were not detected correctly: in some cases, when the gene is split in several parts, only one correspondence is displayed. Note that gene fusions
Dear MicroScope users, Due to a maintenance operation MicroScope will be offline for few hours on Thursday August 17th from 02:00PM CEST. We apologize for any inconvenience,The LABGeM team
The version 3.15.2 of the platform is now deployed: The DBCAN workflow has been updated to use dbCAN v2. MicroScope now includes some metadata from a recent article (see Joshua S. Madin et al., A synthesis of bacterial and archaeal
In order to optimize data management in MicroScope we have decided to proceed to several changes. First we have decided to remove obsolete genome assemblies from MicroScope. This step concerns genomes from GenBank which have been deleted from the database
Description du poste Localisé au CEA/Genoscope, un centre de recherche scientifique dédié à la génomique environnementale, le Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM, UMR8030, https://labgem.genoscope.cns.fr) s’intéresse à l’analyse et l’exploration de la diversité des microorganismes et
Job title: Post-doctoral position in bioinformatics for the analysis of enzyme families from metagenomic data. Type of contract: CEA non-permanent researcher position (24 months) Location: Evry, France (30 km south of Paris) Context: The Genoscope (CEA, François Jacob Biology Institute)