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Mangin, Camille C; Benzerara, Karim; Bergot, Marine; Menguy, Nicolas; Alonso, Béatrice; Fouteau, Stéphanie; Méheust, Raphaël; Chevrier, Daniel; Godon, Christian; Turrini, Elsa; others,
Magnetotactic bacteria from diverse Pseudomonadota families biomineralize intracellular Ca-carbonate Journal Article
In: The ISME Journal, pp. wrae260, 2025.
@article{mangin2025magnetotactic,
title = {Magnetotactic bacteria from diverse Pseudomonadota families biomineralize intracellular Ca-carbonate},
author = {Camille C Mangin and Karim Benzerara and Marine Bergot and Nicolas Menguy and Béatrice Alonso and Stéphanie Fouteau and Raphaël Méheust and Daniel Chevrier and Christian Godon and Elsa Turrini and others},
year = {2025},
date = {2025-01-01},
journal = {The ISME Journal},
pages = {wrae260},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Lopez, Pierre; Fradet, Benjamin; Coffion, Lucie; Bernardet, Jean-François; Saulnier, Denis; Duchaud, Eric
Tenacibaculum platacis sp. nov., Tenacibaculum vairaonense sp. nov. and Tenacibaculum polynesiense sp. nov. isolated from batfish (Platax orbicularis) in Tahiti Island, French Polynesia Journal Article
In: International Journal of Systematic and Evolutionary Microbiology, vol. 75, no. 1, pp. 006605, 2025.
@article{lopez2025tenacibaculum,
title = {Tenacibaculum platacis sp. nov., Tenacibaculum vairaonense sp. nov. and Tenacibaculum polynesiense sp. nov. isolated from batfish (Platax orbicularis) in Tahiti Island, French Polynesia},
author = {Pierre Lopez and Benjamin Fradet and Lucie Coffion and Jean-François Bernardet and Denis Saulnier and Eric Duchaud},
year = {2025},
date = {2025-01-01},
journal = {International Journal of Systematic and Evolutionary Microbiology},
volume = {75},
number = {1},
pages = {006605},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2024
Little, Alexander S; Younker, Isaac T; Schechter, Matthew S; Bernardino, Paola Nol; Méheust, Raphaël; Stemczynski, Joshua; Scorza, Kaylie; Mullowney, Michael W; Sharan, Deepti; Waligurski, Emily; others,
Dietary-and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration Journal Article
In: Nature Microbiology, pp. 1–15, 2024.
@article{little2024dietary,
title = {Dietary-and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration},
author = {Alexander S Little and Isaac T Younker and Matthew S Schechter and Paola Nol Bernardino and Raphaël Méheust and Joshua Stemczynski and Kaylie Scorza and Michael W Mullowney and Deepti Sharan and Emily Waligurski and others},
year = {2024},
date = {2024-01-01},
journal = {Nature Microbiology},
pages = {1–15},
publisher = {Nature Publishing Group UK London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Barbe, Valérie; Jacquin, Justine; Bouzon, Madeleine; Wolinski, Adèle; Derippe, Gabrielle; Cheng, Jingguang; Cruaud, Corinne; Roche, David; Fouteau, Stéphanie; Petit, Jean-Louis; others,
Bioplastic degradation and assimilation processes by a novel bacterium isolated from the marine plastisphere Journal Article
In: Journal of Hazardous Materials, vol. 466, pp. 133573, 2024.
@article{barbe2024bioplastic,
title = {Bioplastic degradation and assimilation processes by a novel bacterium isolated from the marine plastisphere},
author = {Valérie Barbe and Justine Jacquin and Madeleine Bouzon and Adèle Wolinski and Gabrielle Derippe and Jingguang Cheng and Corinne Cruaud and David Roche and Stéphanie Fouteau and Jean-Louis Petit and others},
year = {2024},
date = {2024-01-01},
journal = {Journal of Hazardous Materials},
volume = {466},
pages = {133573},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Arnoux, Jérôme; Bonifati, Angela; Calteau, Alexandra; Dumbrava, Stefania; Gautreau, Guillaume
Integrating Complex Pangenome Graphs Proceedings Article
In: 2024 IEEE 40th International Conference on Data Engineering Workshops (ICDEW), pp. 350–354, IEEE 2024.
@inproceedings{arnoux2024integrating,
title = {Integrating Complex Pangenome Graphs},
author = {Jérôme Arnoux and Angela Bonifati and Alexandra Calteau and Stefania Dumbrava and Guillaume Gautreau},
year = {2024},
date = {2024-01-01},
booktitle = {2024 IEEE 40th International Conference on Data Engineering Workshops (ICDEW)},
pages = {350–354},
organization = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Elisée, Eddy; Ducrot, Laurine; Méheust, Raphaël; Bastard, Karine; Fossey-Jouenne, Aurélie; Grogan, Gideon; Pelletier, Eric; Petit, Jean-Louis; Stam, Mark; Berardinis, Véronique; others,
A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening Journal Article
In: Nature Communications, vol. 15, no. 1, pp. 4933, 2024.
@article{elisee2024refined,
title = {A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening},
author = {Eddy Elisée and Laurine Ducrot and Raphaël Méheust and Karine Bastard and Aurélie Fossey-Jouenne and Gideon Grogan and Eric Pelletier and Jean-Louis Petit and Mark Stam and Véronique Berardinis and others},
year = {2024},
date = {2024-01-01},
journal = {Nature Communications},
volume = {15},
number = {1},
pages = {4933},
publisher = {Nature Publishing Group UK London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Huang, Shuo; Méheust, Raphaël; Barquera, Blanca; Light, Samuel H.
Versatile roles of protein flavinylation in bacterial extracyotosolic electron transfer Journal Article
In: mSystems, vol. 9, no. 8, pp. e00375–24, 2024.
@article{huang2024versatile,
title = {Versatile roles of protein flavinylation in bacterial extracyotosolic electron transfer},
author = {Shuo Huang and Raphaël Méheust and Blanca Barquera and Samuel H. Light},
year = {2024},
date = {2024-01-01},
journal = {mSystems},
volume = {9},
number = {8},
pages = {e00375–24},
publisher = {ASM Journals},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2023
Roche, David; Calteau, Alexandra; Vallenet, David
Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform Book Section
In: Microbial Environmental Genomics (MEG), pp. 241–270, Springer, 2023.
@incollection{roche2023analyzing,
title = {Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform},
author = {David Roche and Alexandra Calteau and David Vallenet},
year = {2023},
date = {2023-01-01},
booktitle = {Microbial Environmental Genomics (MEG)},
pages = {241–270},
publisher = {Springer},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
Dziuba, MV; Paulus, A; Schramm, L; Awal, RP; Pósfai, M; Monteil, CL; Fouteau, S; Uebe, R; Schüler, D
Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium Journal Article
In: The ISME Journal, vol. 17, no. 3, pp. 326–339, 2023.
@article{dziuba2023silent,
title = {Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium},
author = {MV Dziuba and A Paulus and L Schramm and RP Awal and M Pósfai and CL Monteil and S Fouteau and R Uebe and D Schüler},
year = {2023},
date = {2023-01-01},
journal = {The ISME Journal},
volume = {17},
number = {3},
pages = {326–339},
publisher = {Nature Publishing Group UK London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Jabeur, Rania; Guyon, Virginie; Toth, Szabolcs; Pereira, Adriano E; Huynh, Man P; Selmani, Zakia; Boland, Erin; Bosio, Mickael; Beuf, Laurent; Clark, Pete; others,
A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins Journal Article
In: Plos one, vol. 18, no. 2, pp. e0267220, 2023.
@article{jabeur2023novel,
title = {A novel binary pesticidal protein from Chryseobacterium arthrosphaerae controls western corn rootworm by a different mode of action to existing commercial pesticidal proteins},
author = {Rania Jabeur and Virginie Guyon and Szabolcs Toth and Adriano E Pereira and Man P Huynh and Zakia Selmani and Erin Boland and Mickael Bosio and Laurent Beuf and Pete Clark and others},
year = {2023},
date = {2023-01-01},
journal = {Plos one},
volume = {18},
number = {2},
pages = {e0267220},
publisher = {Public Library of Science San Francisco, CA USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
L'Haridon, Stéphane; Goulaouic, Steven; John, Emily St; Fouteau, Stephanie; Reysenbach, Anna-Louise
Methanocaldococcus lauensis sp. nov., a novel deep-sea hydrothermal vent hyperthermophilic methanogen Journal Article
In: International Journal of Systematic and Evolutionary Microbiology, vol. 73, no. 1, pp. 005646, 2023.
@article{l2023methanocaldococcus,
title = {Methanocaldococcus lauensis sp. nov., a novel deep-sea hydrothermal vent hyperthermophilic methanogen},
author = {Stéphane L'Haridon and Steven Goulaouic and Emily St John and Stephanie Fouteau and Anna-Louise Reysenbach},
year = {2023},
date = {2023-01-01},
journal = {International Journal of Systematic and Evolutionary Microbiology},
volume = {73},
number = {1},
pages = {005646},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Daugeron, Marie-Claire; Missoury, Sophia; Cunha, Violette Da; Lazar, Noureddine; Collinet, Bruno; Tilbeurgh, Herman; Basta, Tamara
A paralog of Pcc1 is the fifth core subunit of the KEOPS tRNA-modifying complex in Archaea Journal Article
In: Nature Communications, vol. 14, no. 1, pp. 526, 2023.
@article{daugeron2023paralog,
title = {A paralog of Pcc1 is the fifth core subunit of the KEOPS tRNA-modifying complex in Archaea},
author = {Marie-Claire Daugeron and Sophia Missoury and Violette Da Cunha and Noureddine Lazar and Bruno Collinet and Herman Tilbeurgh and Tamara Basta},
year = {2023},
date = {2023-01-01},
journal = {Nature Communications},
volume = {14},
number = {1},
pages = {526},
publisher = {Nature Publishing Group UK London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Stam, Mark; Lelièvre, Pernelle; Hoebeke, Mark; Corre, Erwan; Barbeyron, Tristan; Michel, Gurvan
SulfAtlas, the sulfatase database: state of the art and new developments Journal Article
In: Nucleic Acids Research, vol. 51, no. D1, pp. D647–D653, 2023.
@article{stam2023sulfatlas,
title = {SulfAtlas, the sulfatase database: state of the art and new developments},
author = {Mark Stam and Pernelle Lelièvre and Mark Hoebeke and Erwan Corre and Tristan Barbeyron and Gurvan Michel},
year = {2023},
date = {2023-01-01},
journal = {Nucleic Acids Research},
volume = {51},
number = {D1},
pages = {D647–D653},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Fossey-Jouenne, Aurélie; Ducrot, Laurine; Jongkind, Ewald PJ; Elisée, Eddy; Zaparucha, Anne; Grogan, Gideon; Paul, Caroline E; Vergne-Vaxelaire, Carine
Native amine dehydrogenases can catalyze the direct reduction of carbonyl compounds to alcohols in the absence of ammonia Journal Article
In: Frontiers in Catalysis, vol. 3, pp. 1105948, 2023.
@article{fossey2023native,
title = {Native amine dehydrogenases can catalyze the direct reduction of carbonyl compounds to alcohols in the absence of ammonia},
author = {Aurélie Fossey-Jouenne and Laurine Ducrot and Ewald PJ Jongkind and Eddy Elisée and Anne Zaparucha and Gideon Grogan and Caroline E Paul and Carine Vergne-Vaxelaire},
year = {2023},
date = {2023-01-01},
journal = {Frontiers in Catalysis},
volume = {3},
pages = {1105948},
publisher = {Frontiers Media SA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Rivera-Lugo, Rafael; Huang, Shuo; Lee, Frank; Méheust, Raphaël; Iavarone, Anthony T; Sidebottom, Ashley M; Oldfield, Eric; Portnoy, Daniel A; Light, Samuel H
Distinct energy-coupling factor transporter subunits enable flavin acquisition and extracytosolic trafficking for extracellular electron transfer in Listeria monocytogenes Journal Article
In: Mbio, vol. 14, no. 1, pp. e03085–22, 2023.
@article{rivera2023distinct,
title = {Distinct energy-coupling factor transporter subunits enable flavin acquisition and extracytosolic trafficking for extracellular electron transfer in Listeria monocytogenes},
author = {Rafael Rivera-Lugo and Shuo Huang and Frank Lee and Raphaël Méheust and Anthony T Iavarone and Ashley M Sidebottom and Eric Oldfield and Daniel A Portnoy and Samuel H Light},
year = {2023},
date = {2023-01-01},
journal = {Mbio},
volume = {14},
number = {1},
pages = {e03085–22},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bremer, Erhard; Calteau, Alexandra; Danchin, Antoine; Harwood, Colin; Helmann, John D; Médigue, Claudine; Palsson, Bernhard O; Sekowska, Agnieszka; Vallenet, David; Zuniga, Abril; others,
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century Journal Article
In: Microbial Biotechnology, 2023.
@article{bremer2023model,
title = {A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century},
author = {Erhard Bremer and Alexandra Calteau and Antoine Danchin and Colin Harwood and John D Helmann and Claudine Médigue and Bernhard O Palsson and Agnieszka Sekowska and David Vallenet and Abril Zuniga and others},
year = {2023},
date = {2023-01-01},
journal = {Microbial Biotechnology},
publisher = {Wiley Online Library},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
de Moura, Ginaini Grazielli Doin; Mouffok, Saida; Gaudu, Nil; Cazalé, Anne-Claire; Milhes, Marine; Bulach, Tabatha; Valière, Sophie; Roche, David; Ferdy, Jean-Baptiste; Masson-Boivin, Catherine; others,
A selective bottleneck during host entry drives the evolution of new legume symbionts Journal Article
In: Molecular Biology and Evolution, vol. 40, no. 5, pp. msad116, 2023.
@article{doin2023selective,
title = {A selective bottleneck during host entry drives the evolution of new legume symbionts},
author = {Ginaini Grazielli Doin de Moura and Saida Mouffok and Nil Gaudu and Anne-Claire Cazalé and Marine Milhes and Tabatha Bulach and Sophie Valière and David Roche and Jean-Baptiste Ferdy and Catherine Masson-Boivin and others},
year = {2023},
date = {2023-01-01},
journal = {Molecular Biology and Evolution},
volume = {40},
number = {5},
pages = {msad116},
publisher = {Oxford University Press US},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Royer, Guilhem; Clermont, Olivier; Marin, Julie; Condamine, Bénédicte; Dion, Sara; Blanquart, François; Galardini, Marco; Denamur, Erick
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence Journal Article
In: Nature Communications, vol. 14, no. 1, pp. 3667, 2023.
@article{royer2023epistatic,
title = {Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence},
author = {Guilhem Royer and Olivier Clermont and Julie Marin and Bénédicte Condamine and Sara Dion and François Blanquart and Marco Galardini and Erick Denamur},
year = {2023},
date = {2023-01-01},
journal = {Nature Communications},
volume = {14},
number = {1},
pages = {3667},
publisher = {Nature Publishing Group UK London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2022
Royer, Guilhem; Clermont, Olivier; Condamine, Bénédicte; Mercier-Darty, Mélanie; Laouénan, Cédric; Lefort, Agnès; Denamur, Erick; Lastours, Victoire
O-Antigen Targeted Vaccines Against Escherichia coli May Be Useful in Reducing Morbidity, Mortality, and Antimicrobial Resistance Journal Article
In: Clinical Infectious Diseases, vol. 74, no. 2, pp. 364–366, 2022.
@article{royer2022antigen,
title = {O-Antigen Targeted Vaccines Against Escherichia coli May Be Useful in Reducing Morbidity, Mortality, and Antimicrobial Resistance},
author = {Guilhem Royer and Olivier Clermont and Bénédicte Condamine and Mélanie Mercier-Darty and Cédric Laouénan and Agnès Lefort and Erick Denamur and Victoire Lastours},
year = {2022},
date = {2022-01-01},
journal = {Clinical Infectious Diseases},
volume = {74},
number = {2},
pages = {364–366},
publisher = {Oxford University Press US},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Denamur, Erick; Condamine, Bénédicte; Esposito-Farèse, Marina; Royer, Guilhem; Clermont, Olivier; Laouenan, Cédric; Lefort, Agnès; Lastours, Victoire; Galardini, Marco; COLIBAFI,; others,
Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome Journal Article
In: PLoS Genetics, vol. 18, no. 3, pp. e1010112, 2022.
@article{denamur2022genome,
title = {Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome},
author = {Erick Denamur and Bénédicte Condamine and Marina Esposito-Farèse and Guilhem Royer and Olivier Clermont and Cédric Laouenan and Agnès Lefort and Victoire Lastours and Marco Galardini and COLIBAFI and others},
year = {2022},
date = {2022-01-01},
journal = {PLoS Genetics},
volume = {18},
number = {3},
pages = {e1010112},
publisher = {Public Library of Science San Francisco, CA USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Surgers, Laure; Chiarabini, Thibault; Royer, Guilhem; Rougier, Hayette; Mercier-Darty, Mélanie; Decré, Dominique; Valin, Nadia; Woerther, Paul-Louis; Decousser, Jean-Winoc; Girard, Pierre-Marie; others,
Evidence of sexual transmission of extended-spectrum β-lactamase-producing Enterobacterales: a cross-sectional and prospective study Journal Article
In: Clinical Infectious Diseases, 2022.
@article{surgers2022evidence,
title = {Evidence of sexual transmission of extended-spectrum β-lactamase-producing Enterobacterales: a cross-sectional and prospective study},
author = {Laure Surgers and Thibault Chiarabini and Guilhem Royer and Hayette Rougier and Mélanie Mercier-Darty and Dominique Decré and Nadia Valin and Paul-Louis Woerther and Jean-Winoc Decousser and Pierre-Marie Girard and others},
year = {2022},
date = {2022-01-01},
journal = {Clinical Infectious Diseases},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Royer, Guilhem; de la Rosa, Jose-Manuel Ortiz; Vuillemin, Xavier; Lacombe, Béatrice; Chau, Françoise; Clermont, Olivier; Mercier-Darty, Mélanie; Decousser, Jean-Winoc; Ricard, Jean-Damien; Nordmann, Patrice; others,
Reduced chlorhexidine susceptibility is associated with tetracycline resistance tet genes in clinical isolates of Escherichia coli Journal Article
In: Antimicrobial Agents and Chemotherapy, vol. 66, no. 3, pp. e01972–21, 2022.
@article{royer2022reduced,
title = {Reduced chlorhexidine susceptibility is associated with tetracycline resistance tet genes in clinical isolates of Escherichia coli},
author = {Guilhem Royer and Jose-Manuel Ortiz de la Rosa and Xavier Vuillemin and Béatrice Lacombe and Françoise Chau and Olivier Clermont and Mélanie Mercier-Darty and Jean-Winoc Decousser and Jean-Damien Ricard and Patrice Nordmann and others},
year = {2022},
date = {2022-01-01},
journal = {Antimicrobial Agents and Chemotherapy},
volume = {66},
number = {3},
pages = {e01972–21},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Delmas, Valérie A; Perchat, Nadia; Monet, Oriane; Fouré, Marion; Darii, Ekatarina; Roche, David; Dubois, Ivan; Pateau, Emilie; Perret, Alain; Döring, Volker; others,
Genetic and biocatalytic basis of formate dependent growth of Escherichia coli strains evolved in continuous culture Journal Article
In: Metabolic Engineering, vol. 72, pp. 200–214, 2022.
@article{delmas2022genetic,
title = {Genetic and biocatalytic basis of formate dependent growth of Escherichia coli strains evolved in continuous culture},
author = {Valérie A Delmas and Nadia Perchat and Oriane Monet and Marion Fouré and Ekatarina Darii and David Roche and Ivan Dubois and Emilie Pateau and Alain Perret and Volker Döring and others},
year = {2022},
date = {2022-01-01},
journal = {Metabolic Engineering},
volume = {72},
pages = {200–214},
publisher = {Academic Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Perchat, Nadia; Dubois, Christelle; Mor-Gautier, Rémi; Duquesne, Sophie; Lechaplais, Christophe; Roche, David; Fouteau, Stéphanie; Darii, Ekaterina; Perret, Alain
Characterization of a novel β-alanine biosynthetic pathway consisting of promiscuous metabolic enzymes Journal Article
In: Journal of Biological Chemistry, vol. 298, no. 7, 2022.
@article{perchat2022characterization,
title = {Characterization of a novel β-alanine biosynthetic pathway consisting of promiscuous metabolic enzymes},
author = {Nadia Perchat and Christelle Dubois and Rémi Mor-Gautier and Sophie Duquesne and Christophe Lechaplais and David Roche and Stéphanie Fouteau and Ekaterina Darii and Alain Perret},
year = {2022},
date = {2022-01-01},
journal = {Journal of Biological Chemistry},
volume = {298},
number = {7},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Monteil, Caroline L; Vallenet, David; Schüler, Dirk; Lefevre, Christopher T
Magnetosome proteins belong to universal protein families involved in many cell processes Journal Article
In: Proceedings of the National Academy of Sciences, vol. 119, no. 39, pp. e2208648119, 2022.
@article{monteil2022magnetosome,
title = {Magnetosome proteins belong to universal protein families involved in many cell processes},
author = {Caroline L Monteil and David Vallenet and Dirk Schüler and Christopher T Lefevre},
year = {2022},
date = {2022-01-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {119},
number = {39},
pages = {e2208648119},
publisher = {National Acad Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Crécy-Lagard, Valérie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J; Burley, Stephen K; Cleveland, Stacey; others,
A roadmap for the functional annotation of protein families: a community perspective Journal Article
In: Database, vol. 2022, 2022.
@article{de2022roadmap,
title = {A roadmap for the functional annotation of protein families: a community perspective},
author = {Valérie Crécy-Lagard and Rocio Amorin de Hegedus and Cecilia Arighi and Jill Babor and Alex Bateman and Ian Blaby and Crysten Blaby-Haas and Alan J Bridge and Stephen K Burley and Stacey Cleveland and others},
year = {2022},
date = {2022-01-01},
journal = {Database},
volume = {2022},
publisher = {Oxford Academic},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Fouteau, Stéphanie; Van, Vuong Bui; Rouy, Zoé; Beraud, Mélanie; Cruaud, Corinne; Cayol, Jean-Luc; Chifflet, Sandrine; Van, Thuoc Chu; The, Thu Pham; Vallenet, David; others,
Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam Journal Article
In: Microbiology Resource Announcements, vol. 11, no. 7, pp. e00132–22, 2022.
@article{fouteau2022complete,
title = {Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam},
author = {Stéphanie Fouteau and Vuong Bui Van and Zoé Rouy and Mélanie Beraud and Corinne Cruaud and Jean-Luc Cayol and Sandrine Chifflet and Thuoc Chu Van and Thu Pham The and David Vallenet and others},
year = {2022},
date = {2022-01-01},
journal = {Microbiology Resource Announcements},
volume = {11},
number = {7},
pages = {e00132–22},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Marin, Julie; Clermont, Olivier; Royer, Guilhem; Mercier-Darty, Mélanie; Decousser, Jean Winoc; Tenaillon, Olivier; Denamur, Erick; Blanquart, François
The population genomics of increased virulence and antibiotic resistance in human commensal Escherichia coli over 30 years in France Journal Article
In: Applied and Environmental Microbiology, vol. 88, no. 15, pp. e00664–22, 2022.
@article{marin2022population,
title = {The population genomics of increased virulence and antibiotic resistance in human commensal Escherichia coli over 30 years in France},
author = {Julie Marin and Olivier Clermont and Guilhem Royer and Mélanie Mercier-Darty and Jean Winoc Decousser and Olivier Tenaillon and Erick Denamur and François Blanquart},
year = {2022},
date = {2022-01-01},
journal = {Applied and Environmental Microbiology},
volume = {88},
number = {15},
pages = {e00664–22},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Maucourt, Bruno; Roche, David; Chaignaud, Pauline; Vuilleumier, Stéphane; Bringel, Françoise
Genome-wide transcription start sites mapping in Methylorubrum grown with dichloromethane and methanol Journal Article
In: Microorganisms, vol. 10, no. 7, pp. 1301, 2022.
@article{maucourt2022genome,
title = {Genome-wide transcription start sites mapping in Methylorubrum grown with dichloromethane and methanol},
author = {Bruno Maucourt and David Roche and Pauline Chaignaud and Stéphane Vuilleumier and Françoise Bringel},
year = {2022},
date = {2022-01-01},
journal = {Microorganisms},
volume = {10},
number = {7},
pages = {1301},
publisher = {Multidisciplinary Digital Publishing Institute},
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pubstate = {published},
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Ducrot, Laurine; Bennett, Megan; André-Leroux, Gwenaëlle; Elisée, Eddy; Marynberg, Sacha; Fossey-Jouenne, Aurélie; Zaparucha, Anne; Grogan, Gideon; Vergne-Vaxelaire, Carine
Expanding the substrate scope of native amine dehydrogenases through in silico structural exploration and targeted protein engineering Journal Article
In: ChemCatChem, pp. e202200880, 2022.
@article{ducrot2022expanding,
title = {Expanding the substrate scope of native amine dehydrogenases through in silico structural exploration and targeted protein engineering},
author = {Laurine Ducrot and Megan Bennett and Gwenaëlle André-Leroux and Eddy Elisée and Sacha Marynberg and Aurélie Fossey-Jouenne and Anne Zaparucha and Gideon Grogan and Carine Vergne-Vaxelaire},
year = {2022},
date = {2022-01-01},
journal = {ChemCatChem},
pages = {e202200880},
keywords = {},
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tppubtype = {article}
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Chaignaud, Pauline; Gruffaz, Christelle; Borreca, Adrien; Fouteau, Stéphanie; Kuhn, Lauriane; Masbou, Jérémy; Rouy, Zoé; Hammann, Philippe; Imfeld, Gwenaël; Roche, David; others,
A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source Journal Article
In: Microorganisms, vol. 10, no. 11, pp. 2302, 2022.
@article{chaignaud2022methylotrophic,
title = {A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source},
author = {Pauline Chaignaud and Christelle Gruffaz and Adrien Borreca and Stéphanie Fouteau and Lauriane Kuhn and Jérémy Masbou and Zoé Rouy and Philippe Hammann and Gwenaël Imfeld and David Roche and others},
year = {2022},
date = {2022-01-01},
journal = {Microorganisms},
volume = {10},
number = {11},
pages = {2302},
publisher = {MDPI},
keywords = {},
pubstate = {published},
tppubtype = {article}
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2021
Royer, Guilhem; Darty, Mélanie Mercier; Clermont, Olivier; Condamine, Bénédicte; Laouenan, Cédric; Decousser, Jean-Winoc; Vallenet, David; Lefort, Agnès; Lastours, Victoire; Denamur, Erick
Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period Journal Article
In: Genome medicine, vol. 13, no. 1, pp. 1–17, 2021.
@article{royer2021phylogroup,
title = {Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period},
author = {Guilhem Royer and Mélanie Mercier Darty and Olivier Clermont and Bénédicte Condamine and Cédric Laouenan and Jean-Winoc Decousser and David Vallenet and Agnès Lefort and Victoire Lastours and Erick Denamur},
year = {2021},
date = {2021-01-01},
journal = {Genome medicine},
volume = {13},
number = {1},
pages = {1–17},
publisher = {Springer},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Schorn, Michelle A; Verhoeven, Stefan; Ridder, Lars; Huber, Florian; Acharya, Deepa D; Aksenov, Alexander A; Aleti, Gajender; Moghaddam, Jamshid Amiri; Aron, Allegra T; Aziz, Saefuddin; others,
A community resource for paired genomic and metabolomic data mining Journal Article
In: Nature Chemical Biology, vol. 17, no. 4, pp. 363–368, 2021.
@article{schorn2021community,
title = {A community resource for paired genomic and metabolomic data mining},
author = {Michelle A Schorn and Stefan Verhoeven and Lars Ridder and Florian Huber and Deepa D Acharya and Alexander A Aksenov and Gajender Aleti and Jamshid Amiri Moghaddam and Allegra T Aron and Saefuddin Aziz and others},
year = {2021},
date = {2021-01-01},
journal = {Nature Chemical Biology},
volume = {17},
number = {4},
pages = {363–368},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Wang, Shi-Zhen; Cruaud, Corinne; Aury, Jean-Marc; Vallenet, David; Poulain, Julie; Vacherie, Benoit; Zaparucha, Anne; Vergne-Vaxelaire, Carine
Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean Journal Article
In: Microbiology Resource Announcements, vol. 10, no. 16, pp. e01062–19, 2021.
@article{wang2021complete,
title = {Complete Genome Sequences of Two Pseudomonas Species Isolated from Marine Environments of the Pacific Ocean},
author = {Shi-Zhen Wang and Corinne Cruaud and Jean-Marc Aury and David Vallenet and Julie Poulain and Benoit Vacherie and Anne Zaparucha and Carine Vergne-Vaxelaire},
year = {2021},
date = {2021-01-01},
journal = {Microbiology Resource Announcements},
volume = {10},
number = {16},
pages = {e01062–19},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
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Castelle, Cindy J; Méheust, Raphaël; Jaffe, Alexander L; Seitz, Kiley; Gong, Xianzhe; Baker, Brett J; Banfield, Jillian F
Protein family content uncovers lineage relationships and bacterial pathway maintenance mechanisms in DPANN archaea Journal Article
In: Frontiers in microbiology, vol. 12, pp. 1233, 2021.
@article{castelle2021protein,
title = {Protein family content uncovers lineage relationships and bacterial pathway maintenance mechanisms in DPANN archaea},
author = {Cindy J Castelle and Raphaël Méheust and Alexander L Jaffe and Kiley Seitz and Xianzhe Gong and Brett J Baker and Jillian F Banfield},
year = {2021},
date = {2021-01-01},
journal = {Frontiers in microbiology},
volume = {12},
pages = {1233},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Méheust, Raphaël; Huang, Shuo; Rivera-Lugo, Rafael; Banfield, Jillian F; Light, Samuel H
Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life Journal Article
In: Elife, vol. 10, pp. e66878, 2021.
@article{meheust2021post,
title = {Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life},
author = {Raphaël Méheust and Shuo Huang and Rafael Rivera-Lugo and Jillian F Banfield and Samuel H Light},
year = {2021},
date = {2021-01-01},
journal = {Elife},
volume = {10},
pages = {e66878},
publisher = {eLife Sciences Publications Limited},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Pascucci, Marco; Royer, Guilhem; Adamek, Jakub; Asmar, Mai Al; Aristizabal, David; Blanche, Laetitia; Bezzarga, Amine; Boniface-Chang, Guillaume; Brunner, Alex; Curel, Christian; others,
AI-based mobile application to fight antibiotic resistance Journal Article
In: Nature communications, vol. 12, no. 1, pp. 1–10, 2021.
@article{pascucci2021ai,
title = {AI-based mobile application to fight antibiotic resistance},
author = {Marco Pascucci and Guilhem Royer and Jakub Adamek and Mai Al Asmar and David Aristizabal and Laetitia Blanche and Amine Bezzarga and Guillaume Boniface-Chang and Alex Brunner and Christian Curel and others},
year = {2021},
date = {2021-01-01},
journal = {Nature communications},
volume = {12},
number = {1},
pages = {1–10},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Joly, Pierre; Calteau, Alexandra; Wauquier, Aurélie; Dumas, Rémi; Beuvin, Mylène; Vallenet, David; Crovadore, Julien; Cochard, Bastien; Lefort, François; Berthon, Jean-Yves
From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi Journal Article
In: Microorganisms, vol. 9, no. 9, pp. 1924, 2021.
@article{joly2021strain,
title = {From Strain Characterization to Field Authorization: Highlights on Bacillus velezensis Strain B25 Beneficial Properties for Plants and Its Activities on Phytopathogenic Fungi},
author = {Pierre Joly and Alexandra Calteau and Aurélie Wauquier and Rémi Dumas and Mylène Beuvin and David Vallenet and Julien Crovadore and Bastien Cochard and François Lefort and Jean-Yves Berthon},
year = {2021},
date = {2021-01-01},
journal = {Microorganisms},
volume = {9},
number = {9},
pages = {1924},
publisher = {MDPI},
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Bazin, Adelme; Medigue, Claudine; Vallenet, David; Calteau, Alexandra
panModule: detecting conserved modules in the variable regions of a pangenome graph Journal Article
In: bioRxiv, pp. 2021–12, 2021.
@article{bazin2021panmodule,
title = {panModule: detecting conserved modules in the variable regions of a pangenome graph},
author = {Adelme Bazin and Claudine Medigue and David Vallenet and Alexandra Calteau},
year = {2021},
date = {2021-01-01},
journal = {bioRxiv},
pages = {2021–12},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
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Imbert, Alyssa; Rompais, Magali; Selloum, Mohammed; Castelli, Florence; Mouton-Barbosa, Emmanuelle; Brandolini-Bunlon, Marion; Chu-Van, Emeline; Joly, Charlotte; Hirschler, Aurélie; Roger, Pierrick; others,
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis Journal Article
In: Scientific Data, vol. 8, no. 1, pp. 1–14, 2021.
@article{imbert2021prometis,
title = {ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis},
author = {Alyssa Imbert and Magali Rompais and Mohammed Selloum and Florence Castelli and Emmanuelle Mouton-Barbosa and Marion Brandolini-Bunlon and Emeline Chu-Van and Charlotte Joly and Aurélie Hirschler and Pierrick Roger and others},
year = {2021},
date = {2021-01-01},
journal = {Scientific Data},
volume = {8},
number = {1},
pages = {1–14},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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}
Royer, G; Roisin, L; Demontant, V; Lo, S; Coutte, L; Lim, P; Pawlotsky, JM; Jacquier, H; Lepeule, R; Rodriguez, C; others,
Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modifications Journal Article
In: Emerging Microbes & Infections, vol. 10, no. 1, pp. 929–938, 2021.
@article{royer2021microdiversity,
title = {Microdiversity of Enterococcus faecalis isolates in cases of infective endocarditis: selection of non-synonymous mutations and large deletions is associated with phenotypic modifications},
author = {G Royer and L Roisin and V Demontant and S Lo and L Coutte and P Lim and JM Pawlotsky and H Jacquier and R Lepeule and C Rodriguez and others},
year = {2021},
date = {2021-01-01},
journal = {Emerging Microbes & Infections},
volume = {10},
number = {1},
pages = {929–938},
publisher = {Taylor & Francis},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Royer, Guilhem; Poirel, Laurent; Combe, Béatrice La; Clermont, Olivier; Chau, Françoise; Mercier-Darty, Mélanie; Denamur, Erick; Nordmann, Patrice; Ricard, Jean-Damien; Decousser, Jean-Winoc
Lack of association between colistin resistance and chlorhexidine reduced susceptibility in clinical isolates of Escherichia coli Journal Article
In: Journal of Antimicrobial Chemotherapy, vol. 76, no. 10, pp. 2736–2737, 2021.
@article{royer2021lack,
title = {Lack of association between colistin resistance and chlorhexidine reduced susceptibility in clinical isolates of Escherichia coli},
author = {Guilhem Royer and Laurent Poirel and Béatrice La Combe and Olivier Clermont and Françoise Chau and Mélanie Mercier-Darty and Erick Denamur and Patrice Nordmann and Jean-Damien Ricard and Jean-Winoc Decousser},
year = {2021},
date = {2021-01-01},
journal = {Journal of Antimicrobial Chemotherapy},
volume = {76},
number = {10},
pages = {2736–2737},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Zhang, Wei-Jia; Zhang, Chan; Zhou, Siyu; Li, Xue-Gong; Mangenot, Sophie; Fouteau, Stéphanie; Guerin, Thomas; Qi, Xiao-Qing; Yang, Jian; Bartlett, Douglas H; others,
Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench Journal Article
In: Microbial Genomics, vol. 7, no. 7, 2021.
@article{zhang2021comparative,
title = {Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench},
author = {Wei-Jia Zhang and Chan Zhang and Siyu Zhou and Xue-Gong Li and Sophie Mangenot and Stéphanie Fouteau and Thomas Guerin and Xiao-Qing Qi and Jian Yang and Douglas H Bartlett and others},
year = {2021},
date = {2021-01-01},
journal = {Microbial Genomics},
volume = {7},
number = {7},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
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Bouzon, Madeleine; Döring, Volker; Dubois, Ivan; Berger, Anne; Stoffel, Gabriele MM; Ramirez, Liliana Calzadiaz; Meyer, Sophia N; Fouré, Marion; Roche, David; Perret, Alain; others,
Change in cofactor specificity of oxidoreductases by adaptive evolution of an Escherichia coli NADPH-auxotrophic strain Journal Article
In: Mbio, vol. 12, no. 4, pp. e00329–21, 2021.
@article{bouzon2021change,
title = {Change in cofactor specificity of oxidoreductases by adaptive evolution of an Escherichia coli NADPH-auxotrophic strain},
author = {Madeleine Bouzon and Volker Döring and Ivan Dubois and Anne Berger and Gabriele MM Stoffel and Liliana Calzadiaz Ramirez and Sophia N Meyer and Marion Fouré and David Roche and Alain Perret and others},
year = {2021},
date = {2021-01-01},
journal = {Mbio},
volume = {12},
number = {4},
pages = {e00329–21},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
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2020
Vallenet, David; Calteau, Alexandra; Dubois, Mathieu; Amours, Paul; Bazin, Adelme; Beuvin, Mylène; Burlot, Laura; Bussell, Xavier; Fouteau, Stéphanie; Gautreau, Guillaume; others,
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis Journal Article
In: Nucleic acids research, vol. 48, no. D1, pp. D579–D589, 2020.
@article{vallenet2020microscope,
title = {MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis},
author = {David Vallenet and Alexandra Calteau and Mathieu Dubois and Paul Amours and Adelme Bazin and Mylène Beuvin and Laura Burlot and Xavier Bussell and Stéphanie Fouteau and Guillaume Gautreau and others},
year = {2020},
date = {2020-01-01},
journal = {Nucleic acids research},
volume = {48},
number = {D1},
pages = {D579–D589},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Gautreau, Guillaume; Bazin, Adelme; Gachet, Mathieu; Planel, Rémi; Burlot, Laura; Dubois, Mathieu; Perrin, Amandine; Médigue, Claudine; Calteau, Alexandra; Cruveiller, Stéphane; others,
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph Journal Article
In: PLOS Computational Biology, vol. 16, no. 3, pp. e1007732, 2020.
@article{gautreau2020ppanggolin,
title = {PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph},
author = {Guillaume Gautreau and Adelme Bazin and Mathieu Gachet and Rémi Planel and Laura Burlot and Mathieu Dubois and Amandine Perrin and Claudine Médigue and Alexandra Calteau and Stéphane Cruveiller and others},
year = {2020},
date = {2020-01-01},
journal = {PLOS Computational Biology},
volume = {16},
number = {3},
pages = {e1007732},
publisher = {Public Library of Science San Francisco, CA USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
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Royer, Guilhem; Fourreau, Fréderic; Gomart, Camille; Maurand, Audrey; Hacquin, Bruno; Ducellier, David; Cizeau, Florence; Lo, Stéphane; Cordonnier-Jourdin, Catherine; Mercier-Darty, Mélanie; others,
Outbreak of an Uncommon Rifampin-resistant bla NDM-1 Citrobacter amalonaticus Strain in a Digestive Rehabilitation Center: The Putative Role of Rifaximin Journal Article
In: Clinical Infectious Diseases, vol. 71, no. 5, pp. 1331–1333, 2020.
@article{royer2020outbreak,
title = {Outbreak of an Uncommon Rifampin-resistant bla NDM-1 Citrobacter amalonaticus Strain in a Digestive Rehabilitation Center: The Putative Role of Rifaximin},
author = {Guilhem Royer and Fréderic Fourreau and Camille Gomart and Audrey Maurand and Bruno Hacquin and David Ducellier and Florence Cizeau and Stéphane Lo and Catherine Cordonnier-Jourdin and Mélanie Mercier-Darty and others},
year = {2020},
date = {2020-01-01},
journal = {Clinical Infectious Diseases},
volume = {71},
number = {5},
pages = {1331–1333},
publisher = {Oxford University Press US},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bazin, Adelme; Gautreau, Guillaume; Médigue, Claudine; Vallenet, David; Calteau, Alexandra
panRGP: a pangenome-based method to predict genomic islands and explore their diversity Journal Article
In: Bioinformatics, vol. 36, no. Supplement_2, pp. i651–i658, 2020.
@article{bazin2020panrgp,
title = {panRGP: a pangenome-based method to predict genomic islands and explore their diversity},
author = {Adelme Bazin and Guillaume Gautreau and Claudine Médigue and David Vallenet and Alexandra Calteau},
year = {2020},
date = {2020-01-01},
journal = {Bioinformatics},
volume = {36},
number = {Supplement_2},
pages = {i651–i658},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Lastours, V; Laouénan, C; Royer, G; Carbonnelle, E; Lepeule, R; Esposito-Farèse, M; Clermont, O; Duval, X; Fantin, B; Mentré, F; others,
Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it Journal Article
In: Journal of Antimicrobial Chemotherapy, vol. 75, no. 8, pp. 2334–2343, 2020.
@article{de2020mortality,
title = {Mortality in Escherichia coli bloodstream infections: antibiotic resistance still does not make it},
author = {V Lastours and C Laouénan and G Royer and E Carbonnelle and R Lepeule and M Esposito-Farèse and O Clermont and X Duval and B Fantin and F Mentré and others},
year = {2020},
date = {2020-01-01},
journal = {Journal of Antimicrobial Chemotherapy},
volume = {75},
number = {8},
pages = {2334–2343},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mercier-Darty, Mélanie; Royer, Guilhem; Lamy, Brigitte; Charron, Chadly; Lemenand, Olivier; Gomart, Camille; Fourreau, Frédéric; Madec, Jean-Yves; Jumas-Bilak, Estelle; Decousser, Jean-Winoc
Comparative whole-genome phylogeny of animal, environmental, and human strains confirms the genogroup organization and diversity of the Stenotrophomonas maltophilia complex Journal Article
In: Applied and environmental microbiology, vol. 86, no. 10, pp. e02919–19, 2020.
@article{mercier2020comparative,
title = {Comparative whole-genome phylogeny of animal, environmental, and human strains confirms the genogroup organization and diversity of the Stenotrophomonas maltophilia complex},
author = {Mélanie Mercier-Darty and Guilhem Royer and Brigitte Lamy and Chadly Charron and Olivier Lemenand and Camille Gomart and Frédéric Fourreau and Jean-Yves Madec and Estelle Jumas-Bilak and Jean-Winoc Decousser},
year = {2020},
date = {2020-01-01},
journal = {Applied and environmental microbiology},
volume = {86},
number = {10},
pages = {e02919–19},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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