Laboratory of Bioinformatics Analyses for Genomics and Metabolism
We are happy to announce the publication of PANORAMA, a new computational tool developed by our team, in PLOS Computational Biology. It has been developed during the PhD thesis of Jérôme Arnoux. Why PANORAMA? Over the past decade, the explosion
Funded by the French Priority Plan on antibioresistance, the ABRomics project aims at developing an online community-driven platform to scale up and improve surveillance and research on antibiotic resistance from a One Health perspective. The platform is made of: The
The aim of this PhD thesis is to achieve new methodological developments for the comparative study of pangenomes. This will involve the development of new bioinformatic methods for inter-pangenome comparisons, which will be particularly based on the developments carried out
PPanGGOLiN (Gautreau et al. 2020) is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes.
Many comparative genomic studies try to get a grasp on the overall gene content of a species. However, with the current explosion of available genomic data, it becomes more complex to use all-vs-all genome comparison approaches. Over the last years,
Horizontal gene transfer (HGT) is a major source of variability in prokaryotic genomes. Regions of Genome Plasticity (RGPs) are clusters of genes located in highly variable genomic regions. Most of them arise from HGT and correspond to Genomic Islands (GIs).
We are happy to announce the publication of PANORAMA, a new computational tool developed by our team, in PLOS Computational Biology. It has been developed during the PhD thesis of Jérôme Arnoux. Why PANORAMA? Over the past decade, the explosion
The MicroScope team was delighted to present a poster at JOBIM 2026, giving a comprehensive overview of the MicroScope platform and highlighting its latest developments. JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), held this year in Strasbourg, France, is