Funded by the French Priority Plan on antibioresistance, the ABRomics project aims at developing an online community-driven platform to scale up and improve surveillance and research on antibiotic resistance from a One Health perspective.
The platform is made of:
- A repository of structured, interoperable, standardized and well-annotated multi-omics microbiological data from human, animal and environmental origins,
- With an up-to-date arsenal of mathematical and bioinformatic tools to answer generic and specific research questions related to AMR.
In collaboration with MetaGenoPolis, the LABGeM team is involved in an use case about the application of meta-pangenomic concept for tracking antibioresistance in metagenomic samples. Developments will be based on the PPanGGOLiN software.
ABRomics: the french national multiomics platform for Antibiotic Resistance research and surveillance