Version 3.17.5 of the platform is now available.
This version includes an update of the ‘genome overview’ page which features:
– the updated calculations for GTDBtk according to release R220.
– the updated calculations for CheckM according to version 1.2.3, and CheckM2/1.1.0 calculations have been added.
Genome clustering now uses both versions of CheckM to filter the genomes. Distance calculations have also been updated using Mash 2.3, and the Louvain resolution parameter has been changed from 2 to 1 to account for over-represented taxa.
The Phigaro calculations have also been updated according to version 2.4.0. You can find them on the “Gene annotator” , “Pan-genome RGPs” and “Prophage & Defense systems” pages.
We’ve also reviewed all the emails you receive from the platform so you can find the essential information you need to get the most out of MicroScope.
Please report us any bugs you may meet.