Publications

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349 entries « 5 of 7 »

2012

Mavingui, Patrick; Moro, Claire Valiente; Tran-Van, Van; Wisniewski-Dyé, Florence; Raquin, Vincent; Minard, Guillaume; Tran, Florence-Hélène; Voronin, Denis; Rouy, Zoé; Bustos, Patricia; others,

Whole-genome sequence of Wolbachia strain wAlbB, an endosymbiont of tiger mosquito vector Aedes albopictus Journal Article

In: Journal of bacteriology, vol. 194, no. 7, pp. 1840–1840, 2012.

BibTeX

Duquesne, K; Prima, Valérie; Ji, B; Rouy, Z; Médigue, C; Talla, E; Sturgis, JN

Draft genome sequence of the purple photosynthetic bacterium Phaeospirillum molischianum DSM120, a particularly versatile bacterium Journal Article

In: Journal of bacteriology, vol. 194, no. 13, pp. 3559–3560, 2012.

BibTeX

Acosta-Cruz, Erika; Wisniewski-Dyé, Florence; Rouy, Zoé; Barbe, Valérie; Valdés, María; Mavingui, Patrick

Insights into the 1.59-Mbp largest plasmid of Azospirillum brasilense CBG497 Journal Article

In: Archives of microbiology, vol. 194, no. 9, pp. 725–736, 2012.

BibTeX

Alcántara, Rafael; Axelsen, Kristian B; Morgat, Anne; Belda, Eugeni; Coudert, Elisabeth; Bridge, Alan; Cao, Hong; Matos, Paula De; Ennis, Marcus; Turner, Steve; others,

Rhea—a manually curated resource of biochemical reactions Journal Article

In: Nucleic acids research, vol. 40, no. D1, pp. D754–D760, 2012.

BibTeX

2011

Kittichotirat, Weerayuth; Good, Nathan M; Hall, Rob; Bringel, Françoise; Lajus, Aurélie; Médigue, Claudine; Smalley, Nicole E; Beck, David; Bumgarner, Roger; Vuilleumier, Stéphane; others,

Genome Sequence of Methyloversatilis universalisFAM5T, a Methylotrophic Representative of the Order Rhodocyclales Journal Article

In: Journal of bacteriology, vol. 193, no. 17, pp. 4541–4542, 2011.

BibTeX

Monot, Marc; Boursaux-Eude, Caroline; Thibonnier, Marie; Vallenet, David; Moszer, Ivan; Medigue, Claudine; Martin-Verstraete, Isabelle; Dupuy, Bruno

Reannotation of the genome sequence of Clostridium difficile strain 630 Journal Article

In: Journal of medical microbiology, vol. 60, no. 8, pp. 1193–1199, 2011.

BibTeX

Wisniewski-Dyé, Florence; Borziak, Kirill; Khalsa-Moyers, Gurusahai; Alexandre, Gladys; Sukharnikov, Leonid O; Wuichet, Kristin; Hurst, Gregory B; McDonald, W Hayes; Robertson, Jon S; Barbe, Valérie; others,

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments Journal Article

In: PLoS genetics, vol. 7, no. 12, pp. e1002430, 2011.

BibTeX

Bertin, Philippe N; Heinrich-Salmeron, Audrey; Pelletier, Eric; Goulhen-Chollet, Florence; Arsène-Ploetze, Florence; Gallien, Sébastien; Lauga, Béatrice; Casiot, Corinne; Calteau, Alexandra; Vallenet, David; others,

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics Journal Article

In: The ISME journal, vol. 5, no. 11, pp. 1735–1747, 2011.

BibTeX

Gomez-Valero, Laura; Rusniok, Christophe; Jarraud, Sophie; Vacherie, Benoit; Rouy, Zoé; Barbe, Valerie; Medigue, Claudine; Etienne, Jerome; Buchrieser, Carmen

Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes Journal Article

In: BMC genomics, vol. 12, no. 1, pp. 536, 2011.

BibTeX

Perret, Alain; Lechaplais, Christophe; Tricot, Sabine; Perchat, Nadia; Vergne, Carine; Pellé, Christine; Bastard, Karine; Kreimeyer, Annett; Vallenet, David; Zaparucha, Anne; others,

A novel acyl-CoA beta-transaminase characterized from a metagenome Journal Article

In: PloS one, vol. 6, no. 8, pp. e22918, 2011.

BibTeX

Pujol, Ange; Crost, Emmanuelle H; Simon, Gwenola; Barbe, Valerie; Vallenet, David; Gomez, Ana; Fons, Michel

Characterization and distribution of the gene cluster encoding RumC, an anti-C lostridium perfringens bacteriocin produced in the gut Journal Article

In: FEMS microbiology ecology, vol. 78, no. 2, pp. 405–415, 2011.

BibTeX

Mornico, Damien; Miché, Lucie; Béna, Gilles; Nouwen, Nico; Verméglio, André; Vallenet, David; Smith, Alexander AT; Giraud, Eric; Médigue, Claudine; Moulin, Lionel

Comparative genomics of Aeschynomene symbionts: insights into the ecological lifestyle of nod-independent photosynthetic bradyrhizobia Journal Article

In: Genes, vol. 3, no. 1, pp. 35–61, 2011.

BibTeX

Remenant, Beno^ıt; Cambiaire, Jean-Charles; Cellier, Gilles; Jacobs, Jonathan M; Mangenot, Sophie; Barbe, Valerie; Lajus, Aurelie; Vallenet, David; Medigue, Claudine; Fegan, Mark; others,

Ralstonia syzygii, the blood disease bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles Journal Article

In: PLoS One, vol. 6, no. 9, pp. e24356, 2011.

BibTeX

Vieira, Gilles; Sabarly, Victor; Bourguignon, Pierre-Yves; Durot, Maxime; Fèvre, François Le; Mornico, Damien; Vallenet, David; Bouvet, Odile; Denamur, Erick; Schachter, Vincent; others,

Core and panmetabolism in Escherichia coli Journal Article

In: Journal of bacteriology, vol. 193, no. 6, pp. 1461–1472, 2011.

BibTeX

Wielgoss, Sébastien; Barrick, Jeffrey E; Tenaillon, Olivier; Cruveiller, Stéphane; Chane-Woon-Ming, Béatrice; Médigue, Claudine; Lenski, Richard E; Schneider, Dominique

Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli Journal Article

In: G3: Genes, Genomes, Genetics, vol. 1, no. 3, pp. 183–186, 2011.

BibTeX

Vuilleumier, Stéphane; Nadalig, Thierry; Haque, Muhammad Farhan Ul; Magdelenat, Ghislaine; Lajus, Aurélie; Roselli, Sandro; Muller, Emilie EL; Gruffaz, Christelle; Barbe, Valérie; Médigue, Claudine; others,

Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1 Journal Article

In: Journal of bacteriology, vol. 193, no. 18, pp. 5035–5036, 2011.

BibTeX

Billard-Pomares, Typhaine; Tenaillon, Olivier; Nagard, Hervé Le; Rouy, Zoé; Cruveiller, Stéphane; Médigue, Claudine; Arlet, Guillaume; Denamur, Erick; Branger, Catherine

Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain Journal Article

In: Antimicrobial agents and chemotherapy, vol. 55, no. 3, pp. 1270–1273, 2011.

BibTeX

Stein, Lisa Y; Bringel, Françoise; DiSpirito, Alan A; Han, Sukkyun; Jetten, Mike SM; Kalyuzhnaya, Marina G; Kits, K Dimitri; Klotz, Martin G; Camp, Huub JM Op; Semrau, Jeremy D; others,

Genome sequence of the methanotrophic Alphaproteobacterium, Methylocystis sp. Rockwell (ATCC 49242) Journal Article

In: Journal of bacteriology, 2011.

BibTeX

Engel, Philipp; Salzburger, Walter; Liesch, Marius; Chang, Chao-Chin; Maruyama, Soichi; Lanz, Christa; Calteau, Alexandra; Lajus, Aurélie; Médigue, Claudine; Schuster, Stephan C; others,

Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella Journal Article

In: PLoS genetics, vol. 7, no. 2, pp. e1001296, 2011.

BibTeX

Svenning, Mette M; Hestnes, Anne Grethe; Wartiainen, Ingvild; Stein, Lisa Y; Klotz, Martin G; Kalyuzhnaya, Marina G; Spang, Anja; Bringel, Françoise; Vuilleumier, Stéphane; Lajus, Aurélie; others,

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96 Journal Article

In: Journal of bacteriology, vol. 193, no. 22, pp. 6418–6419, 2011.

BibTeX

Barbe, Valérie; Bouzon, Madeleine; Mangenot, Sophie; Badet, Bernard; Poulain, Julie; Segurens, Béatrice; Vallenet, David; Marlière, Philippe; Weissenbach, Jean

Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites Journal Article

In: Journal of bacteriology, vol. 193, no. 18, pp. 5055–5056, 2011.

BibTeX

Marlière, Philippe; Patrouix, Julien; Döring, Volker; Herdewijn, Piet; Tricot, Sabine; Cruveiller, Stéphane; Bouzon, Madeleine; Mutzel, Rupert

Chemical evolution of a bacterium’s genome Journal Article

In: Angewandte Chemie International Edition, vol. 50, no. 31, pp. 7109–7114, 2011.

BibTeX

Chaston, John M; Suen, Garret; Tucker, Sarah L; Andersen, Aaron W; Bhasin, Archna; Bode, Edna; Bode, Helge B; Brachmann, Alexander O; Cowles, Charles E; Cowles, Kimberly N; others,

The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes Journal Article

In: PloS one, vol. 6, no. 11, pp. e27909, 2011.

BibTeX

Bellinzoni, Marco; Bastard, Karine; Perret, Alain; Zaparucha, Anne; Perchat, Nadia; Vergne, Carine; Wagner, Tristan; Melo-Minardi, Raquel C; Artiguenave, François; Cohen, Georges N; others,

3-Keto-5-aminohexanoate Cleavage Enzyme A COMMON FOLD FOR AN UNCOMMON CLAISEN-TYPE CONDENSATION Journal Article

In: Journal of Biological Chemistry, vol. 286, no. 31, pp. 27399–27405, 2011.

BibTeX

Remenant, B; Cambiaire, JC De; Cellier, G; Jacobs, JM; Mangenot, S; Barbe, V; Lajus, A; Vallenet, D; Medigue, C; Fegan, M; others,

The genomes of the insect-transmitted plant pathogens Ralstonia syzygii and Blood Disease Bacterium reveal a recent evolutionary origin within the R. solanacearum species Journal Article

In: PLoS One, vol. 6, no. 9, pp. e24356, 2011.

BibTeX

Bonnefoy, Violaine; Duran, Robert; Mornico, Damien; Medigue, Claudine

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and... Journal Article

In: ISME Journal, vol. 5, pp. 1735–1747, 2011.

BibTeX

Médigue, Claudine

Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum-Lactamase from an Escherichia coli O102-ST405 Strain Journal Article

In: Antimicrobial Agents and Chemotherapy, 2011.

BibTeX

2010

Roche, David; Fléchard, Maud; Lallier, Nathalie; Répérant, Maryline; Brée, Annie; Pascal, Géraldine; Schouler, Catherine; Germon, Pierre

ICEEc2, a new integrative and conjugative element belonging to the pKLC102/PAGI-2 family, identified in Escherichia coli strain BEN374 Journal Article

In: Journal of bacteriology, vol. 192, no. 19, pp. 5026–5036, 2010.

BibTeX

Touzain, Fabrice; Denamur, Erick; Médigue, Claudine; Barbe, Valérie; Karoui, Meriem El; Petit, Marie-Agnès

Research Small variable segments constitute a major type of diversity of bacterial genomes at the species level Journal Article

In: 2010.

BibTeX

Touzain, Fabrice; Denamur, Erick; Médigue, Claudine; Barbe, Valérie; Karoui, Meriem El; Petit, Marie-Agnès

Small variable segments constitute a major type of diversity of bacterial genomes at the species level Journal Article

In: Genome Biology, vol. 11, no. 4, pp. R45, 2010.

BibTeX

Remenant, Beno^ıt; Coupat-Goutaland, Bénédicte; Guidot, Alice; Cellier, Gilles; Wicker, Emmanuel; Allen, Caitilyn; Fegan, Mark; Pruvost, Olivier; Elbaz, Mounira; Calteau, Alexandra; others,

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence Journal Article

In: BMC genomics, vol. 11, no. 1, pp. 379, 2010.

BibTeX

Méjean, Annick; Mazmouz, Rabia; Mann, Stéphane; Calteau, Alexandra; Médigue, Claudine; Ploux, Olivier

The genome sequence of the cyanobacterium Oscillatoria sp. PCC 6506 reveals several gene clusters responsible for the biosynthesis of toxins and secondary metabolites Journal Article

In: Journal of bacteriology, vol. 192, no. 19, pp. 5264–5265, 2010.

BibTeX

Miquel, Sylvie; Peyretaillade, Eric; Claret, Laurent; Vallée, Amélie De; Dossat, Carole; Vacherie, Benoit; Segurens, Beatrice; Barbe, Valerie; Sauvanet, Pierre; Neut, Christel; others,

Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82 Journal Article

In: PloS one, vol. 5, no. 9, pp. e12714, 2010.

BibTeX

Janssen, Paul J; Houdt, Rob Van; Moors, Hugo; Monsieurs, Pieter; Morin, Nicolas; Michaux, Arlette; Benotmane, Mohammed A; Leys, Natalie; Vallaeys, Tatiana; Lapidus, Alla; others,

The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments Journal Article

In: PLoS One, vol. 5, no. 5, pp. e10433, 2010.

BibTeX

Marchetti, Marta; Capela, Delphine; Glew, Michelle; Cruveiller, Stéphane; Chane-Woon-Ming, Béatrice; Gris, Carine; Timmers, Ton; Poinsot, Véréna; Gilbert, Luz B; Heeb, Philipp; others,

Experimental evolution of a plant pathogen into a legume symbiont Journal Article

In: PLoS biology, vol. 8, no. 1, pp. e1000280, 2010.

BibTeX

Bonaldi, Katia; Gourion, Benjamin; Fardoux, Joel; Hannibal, Laure; Cartieaux, Fabienne; Boursot, Marc; Vallenet, David; Chaintreuil, Clémence; Prin, Yves; Nouwen, Nico; others,

Large-scale transposon mutagenesis of photosynthetic Bradyrhizobium sp. strain ORS278 reveals new genetic loci putatively important for nod-independent symbiosis with Aeschynomene indica Journal Article

In: Molecular plant-microbe interactions, vol. 23, no. 6, pp. 760–770, 2010.

BibTeX

Bechah, Yassina; Karkouri, Khalid El; Mediannikov, Oleg; Leroy, Quentin; Pelletier, Nicolas; Robert, Catherine; Médigue, Claudine; Mege, Jean-Louis; Raoult, Didier

Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities Journal Article

In: Genome research, vol. 20, no. 5, pp. 655–663, 2010.

BibTeX

Stein, Lisa Y; Bringel, Francoise O; DiSpiritto, Alan A; Han, Sukkyun; Jetten, MSM; Kalyuzhnaya, Marina G; Kits, K Dimitri; Klotz, Martin G; den Camp, HJM Op; Semrau, Jeremy D; others,

Genome sequence of the methanotrophic Alphaproteobacterium, Methylocystis sp. Rockwell (ATCC 49242) Journal Article

In: Journal of Bacteriology, vol. 193, no. 10, pp. 6497–6498, 2010.

BibTeX

Ogier, Jean-Claude; Calteau, Alexandra; Forst, Steve; Goodrich-Blair, Heidi; Roche, David; Rouy, Zoé; Suen, Garret; Zumbihl, Robert; Givaudan, Alain; Tailliez, Patrick; others,

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus Journal Article

In: BMC genomics, vol. 11, no. 1, pp. 568, 2010.

BibTeX

Alloisio, Nicole; Queiroux, Clothilde; Fournier, Pascale; Pujic, Petar; Normand, Philippe; Vallenet, David; Médigue, Claudine; Yamaura, Masatoshi; Kakoi, Kentaro; Kucho, Ken-ichi

The Frankia alni symbiotic transcriptome Journal Article

In: Molecular Plant-Microbe Interactions, vol. 23, no. 5, pp. 593–607, 2010.

BibTeX

Fonknechten, Nuria; Chaussonnerie, Sébastien; Tricot, Sabine; Lajus, Aurélie; Andreesen, Jan R; Perchat, Nadia; Pelletier, Eric; Gouyvenoux, Michel; Barbe, Valérie; Salanoubat, Marcel; others,

Clostridium sticklandii, a specialist in amino acid degradation: revisiting its metabolism through its genome sequence Journal Article

In: BMC genomics, vol. 11, no. 1, pp. 555, 2010.

BibTeX

Thiberge, Jean-Michel; Boursaux-Eude, Caroline; Lehours, Philippe; Dillies, Marie-Agnès; Creno, Sophie; Coppée, Jean-Yves; Rouy, Zoé; Lajus, Aurélie; Ma, Laurence; Burucoa, Christophe; others,

From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma Journal Article

In: BMC genomics, vol. 11, no. 1, pp. 368, 2010.

BibTeX

Derbise, Anne; Chenal-Francisque, Viviane; Huon, Christèle; Fayolle, Corinne; Demeure, Christian E; Chane-Woon-Ming, Béatrice; Médigue, Claudine; Hinnebusch, B Joseph; Carniel, Elisabeth

Delineation and analysis of chromosomal regions specifying Yersinia pestis Journal Article

In: Infection and immunity, vol. 78, no. 9, pp. 3930–3941, 2010.

BibTeX

Melo-Minardi, Raquel C; Bastard, Karine; Artiguenave, François

Identification of subfamily-specific sites based on active sites modeling and clustering Journal Article

In: Bioinformatics, vol. 26, no. 24, pp. 3075–3082, 2010.

BibTeX

Arsène-Ploetze, Florence; Koechler, Sandrine; Marchal, Marie; Coppée, Jean-Yves; Chandler, Michael; Bonnefoy, Violaine; Brochier-Armanet, Céline; Barakat, Mohamed; Barbe, Valérie; Battaglia-Brunet, Fabienne; others,

Structure, function, and evolution of the Thiomonas spp. genome Journal Article

In: PLoS genetics, vol. 6, no. 2, pp. e1000859, 2010.

BibTeX

Remenant, Beno^ıt; Coupat-Goutaland, Bénédicte; Guidot, Alice; Cellier, Gilles; Wicker, Emmanuel; Allen, Caitilyn; Fegan, Mark; Pruvost, Olivier; Elbaz, Mounira; Calteau, Alexandra; others,

Research article Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence Journal Article

In: BMC Genomics, vol. 11, no. 379, pp. 2–16, 2010.

BibTeX

Cruveiller, Stéphane; Chane-Woon-Ming, Béatrice; Poinsot, Véréna; Heeb, Philipp; Médigue, Claudine; others,

Experimental Evolution of a Plant Pathogen into a Legume Symbiont Journal Article

In: 2010.

BibTeX

2009

Peigne, Chantal; Bidet, Philippe; Mahjoub-Messai, Farah; Plainvert, Céline; Barbe, Valérie; Médigue, Claudine; Frapy, Eric; Nassif, Xavier; Denamur, Erick; Bingen, Edouard; others,

The plasmid of neonatal meningitis Escherichia coli strain S88 (O45: K1: H7) is closely related to avian pathogenic E. coli plasmids and is associated with high level bacteremia in neonatal rat meningitis model Journal Article

In: Infect. Immun, vol. 77, no. 6, pp. 2272–2284, 2009.

BibTeX

Peigne, Chantal; Bidet, Philippe; Mahjoub-Messai, Farah; Plainvert, Céline; Barbe, Valérie; Médigue, Claudine; Frapy, Eric; Nassif, Xavier; Denamur, Erick; Bingen, Edouard; others,

The plasmid of neonatal meningitis Escherichia coli strain S88 (O45: K1: H7) is closely related to avian pathogenic E. coli plasmids and is associated with high level bacteremia in neonatal rat meningitis model Journal Article

In: Infection and Immunity, 2009.

BibTeX

Barbe, Valerie; Cruveiller, Stephane; Kunst, Frank; Lenoble, Patricia; Meurice, Guillaume; Sekowska, Agnieszka; Vallenet, David; Wang, Tingzhang; Moszer, Ivan; Médigue, Claudine; others,

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later Journal Article

In: Microbiology, vol. 155, no. 6, pp. 1758–1775, 2009.

BibTeX

349 entries « 5 of 7 »