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Bastard, Karine; Smith, Adam Alexander Thil; Vergne-Vaxelaire, Carine; Perret, Alain; Zaparucha, Anne; Melo-Minardi, Raquel De; Mariage, Aline; Boutard, Magali; Debard, Adrien; Lechaplais, Christophe; others,
Revealing the hidden functional diversity of an enzyme family Journal Article
In: Nature chemical biology, vol. 10, no. 1, pp. 42–49, 2014.
@article{bastard2014revealing,
title = {Revealing the hidden functional diversity of an enzyme family},
author = {Karine Bastard and Adam Alexander Thil Smith and Carine Vergne-Vaxelaire and Alain Perret and Anne Zaparucha and Raquel De Melo-Minardi and Aline Mariage and Magali Boutard and Adrien Debard and Christophe Lechaplais and others},
year = {2014},
date = {2014-01-01},
journal = {Nature chemical biology},
volume = {10},
number = {1},
pages = {42–49},
publisher = {Nature Publishing Group US New York},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Stuani, Lucille; Lechaplais, Christophe; Salminen, Aaro V; Ségurens, Béatrice; Durot, Maxime; Castelli, Vanina; Pinet, Agnès; Labadie, Karine; Cruveiller, Stéphane; Weissenbach, Jean; others,
Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach Journal Article
In: Metabolomics, vol. 10, no. 6, pp. 1223–1238, 2014.
@article{stuani2014novel,
title = {Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach},
author = {Lucille Stuani and Christophe Lechaplais and Aaro V Salminen and Béatrice Ségurens and Maxime Durot and Vanina Castelli and Agnès Pinet and Karine Labadie and Stéphane Cruveiller and Jean Weissenbach and others},
year = {2014},
date = {2014-01-01},
journal = {Metabolomics},
volume = {10},
number = {6},
pages = {1223–1238},
publisher = {Springer},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Gomez-Valero, Laura; Rusniok, Christophe; Rolando, Monica; Neou, Mario; Dervins-Ravault, Delphine; Demirtas, Jasmin; Rouy, Zoe; Moore, Robert J; Chen, Honglei; Petty, Nicola K; others,
Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires’ disease Journal Article
In: Genome biology, vol. 15, no. 11, pp. 505, 2014.
@article{gomez2014comparative,
title = {Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires’ disease},
author = {Laura Gomez-Valero and Christophe Rusniok and Monica Rolando and Mario Neou and Delphine Dervins-Ravault and Jasmin Demirtas and Zoe Rouy and Robert J Moore and Honglei Chen and Nicola K Petty and others},
year = {2014},
date = {2014-01-01},
journal = {Genome biology},
volume = {15},
number = {11},
pages = {505},
publisher = {BioMed Central London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bordier, Franck; Stam, Mark; Darii, Ekaterina; Tricot, Sabine; Fossey, Aurelie; Rohault, Johanna; Debard, Adrien; Mariage, Aline; Pellouin, Virginie; Petit, Jean-Louis; others,
Large α-aminonitrilase activity screening of nitrilase superfamily members: access to conversion and enantiospecificity by LC–MS Journal Article
In: Journal of Molecular Catalysis B: Enzymatic, vol. 107, pp. 79–88, 2014.
@article{bordier2014large,
title = {Large α-aminonitrilase activity screening of nitrilase superfamily members: access to conversion and enantiospecificity by LC–MS},
author = {Franck Bordier and Mark Stam and Ekaterina Darii and Sabine Tricot and Aurelie Fossey and Johanna Rohault and Adrien Debard and Aline Mariage and Virginie Pellouin and Jean-Louis Petit and others},
year = {2014},
date = {2014-01-01},
journal = {Journal of Molecular Catalysis B: Enzymatic},
volume = {107},
pages = {79–88},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Zhang, Sheng-Da; Barbe, Valérie; Garel, Marc; Zhang, Wei-Jia; Chen, Haitao; Santini, Claire-Lise; Murat, Dorothée; Jing, Hongmei; Zhao, Yuan; Lajus, Aurélie; others,
Genome sequence of luminous piezophile Photobacterium phosphoreum ANT-2200 Journal Article
In: Genome announcements, vol. 2, no. 2, pp. e00096–14, 2014.
@article{zhang2014genome,
title = {Genome sequence of luminous piezophile Photobacterium phosphoreum ANT-2200},
author = {Sheng-Da Zhang and Valérie Barbe and Marc Garel and Wei-Jia Zhang and Haitao Chen and Claire-Lise Santini and Dorothée Murat and Hongmei Jing and Yuan Zhao and Aurélie Lajus and others},
year = {2014},
date = {2014-01-01},
journal = {Genome announcements},
volume = {2},
number = {2},
pages = {e00096–14},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ramos, Pablo Ivan Pereira; Picão, Renata Christina; Almeida, Luiz Gonzaga Paula; Lima, Nicholas Costa B; Girardello, Raquel; Vivan, Ana Carolina P; Xavier, Danilo E; Barcellos, Fernando G; Pelisson, Marsileni; Vespero, Eliana C; others,
Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms Journal Article
In: BMC genomics, vol. 15, no. 1, pp. 54, 2014.
@article{ramos2014comparative,
title = {Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms},
author = {Pablo Ivan Pereira Ramos and Renata Christina Picão and Luiz Gonzaga Paula Almeida and Nicholas Costa B Lima and Raquel Girardello and Ana Carolina P Vivan and Danilo E Xavier and Fernando G Barcellos and Marsileni Pelisson and Eliana C Vespero and others},
year = {2014},
date = {2014-01-01},
journal = {BMC genomics},
volume = {15},
number = {1},
pages = {54},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Calteau, Alexandra; Fewer, David P; Latifi, Amel; Coursin, Thérèse; Laurent, Thierry; Jokela, Jouni; Kerfeld, Cheryl A; Sivonen, Kaarina; Piel, Jörn; Gugger, Muriel
Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria Journal Article
In: BMC genomics, vol. 15, no. 1, pp. 977, 2014.
@article{calteau2014phylum,
title = {Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria},
author = {Alexandra Calteau and David P Fewer and Amel Latifi and Thérèse Coursin and Thierry Laurent and Jouni Jokela and Cheryl A Kerfeld and Kaarina Sivonen and Jörn Piel and Muriel Gugger},
year = {2014},
date = {2014-01-01},
journal = {BMC genomics},
volume = {15},
number = {1},
pages = {977},
publisher = {BioMed Central London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Billard-Pomares, Typhaine; Fouteau, Stéphanie; Jacquet, Marie Elise; Roche, David; Barbe, Valérie; Castellanos, Miguel; Bouet, Jean Yves; Cruveiller, Stéphane; Médigue, Claudine; Blanco, Jorge; others,
Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain Journal Article
In: Antimicrobial agents and chemotherapy, vol. 58, no. 11, pp. 6550–6557, 2014.
@article{billard2014characterization,
title = {Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain},
author = {Typhaine Billard-Pomares and Stéphanie Fouteau and Marie Elise Jacquet and David Roche and Valérie Barbe and Miguel Castellanos and Jean Yves Bouet and Stéphane Cruveiller and Claudine Médigue and Jorge Blanco and others},
year = {2014},
date = {2014-01-01},
journal = {Antimicrobial agents and chemotherapy},
volume = {58},
number = {11},
pages = {6550–6557},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Trujillo, Martha E; Bacigalupe, Rodrigo; Pujic, Petar; Igarashi, Yasuhiro; Benito, Patricia; Riesco, Raúl; Médigue, Claudine; Normand, Philippe
Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style? Journal Article
In: PloS one, vol. 9, no. 9, pp. e108522, 2014.
@article{trujillo2014genome,
title = {Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?},
author = {Martha E Trujillo and Rodrigo Bacigalupe and Petar Pujic and Yasuhiro Igarashi and Patricia Benito and Raúl Riesco and Claudine Médigue and Philippe Normand},
year = {2014},
date = {2014-01-01},
journal = {PloS one},
volume = {9},
number = {9},
pages = {e108522},
publisher = {Public Library of Science},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Remigi, Philippe; Capela, Delphine; Clerissi, Camille; Tasse, Léna; Torchet, Rachel; Bouchez, Olivier; Batut, Jacques; Cruveiller, Stéphane; Rocha, Eduardo PC; Masson-Boivin, Catherine
Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer Journal Article
In: PLoS biology, vol. 12, no. 9, pp. e1001942, 2014.
@article{remigi2014transient,
title = {Transient hypermutagenesis accelerates the evolution of legume endosymbionts following horizontal gene transfer},
author = {Philippe Remigi and Delphine Capela and Camille Clerissi and Léna Tasse and Rachel Torchet and Olivier Bouchez and Jacques Batut and Stéphane Cruveiller and Eduardo PC Rocha and Catherine Masson-Boivin},
year = {2014},
date = {2014-01-01},
journal = {PLoS biology},
volume = {12},
number = {9},
pages = {e1001942},
publisher = {Public Library of Science},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Sorokina, Maria; Stam, Mark; Médigue, Claudine; Lespinet, Olivier; Vallenet, David
Profiling the orphan enzymes Journal Article
In: Biology direct, vol. 9, no. 1, pp. 10, 2014.
@article{sorokina2014profiling,
title = {Profiling the orphan enzymes},
author = {Maria Sorokina and Mark Stam and Claudine Médigue and Olivier Lespinet and David Vallenet},
year = {2014},
date = {2014-01-01},
journal = {Biology direct},
volume = {9},
number = {1},
pages = {10},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2013
Kristiansen, Rikke; Nguyen, Hien Thi Thu; Saunders, Aaron Marc; Nielsen, Jeppe Lund; Wimmer, Reinhard; Le, Vang Quy; McIlroy, Simon Jon; Petrovski, Steve; Seviour, Robert J; Calteau, Alexandra; others,
A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal Journal Article
In: The ISME journal, vol. 7, no. 3, pp. 543–554, 2013.
@article{kristiansen2013metabolic,
title = {A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal},
author = {Rikke Kristiansen and Hien Thi Thu Nguyen and Aaron Marc Saunders and Jeppe Lund Nielsen and Reinhard Wimmer and Vang Quy Le and Simon Jon McIlroy and Steve Petrovski and Robert J Seviour and Alexandra Calteau and others},
year = {2013},
date = {2013-01-01},
journal = {The ISME journal},
volume = {7},
number = {3},
pages = {543–554},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Kits, K Dimitri; Kalyuzhnaya, Marina G; Klotz, Martin G; Jetten, Mike SM; Camp, Huub JM Op; Vuilleumier, Stéphane; Bringel, Françoise; DiSpirito, Alan A; Murrell, J Colin; Bruce, David; others,
Genome sequence of the obligate gammaproteobacterial methanotroph Methylomicrobium album strain BG8 Journal Article
In: Genome announcements, vol. 1, no. 2, pp. e00170–13, 2013.
@article{kits2013genome,
title = {Genome sequence of the obligate gammaproteobacterial methanotroph Methylomicrobium album strain BG8},
author = {K Dimitri Kits and Marina G Kalyuzhnaya and Martin G Klotz and Mike SM Jetten and Huub JM Op Camp and Stéphane Vuilleumier and Françoise Bringel and Alan A DiSpirito and J Colin Murrell and David Bruce and others},
year = {2013},
date = {2013-01-01},
journal = {Genome announcements},
volume = {1},
number = {2},
pages = {e00170–13},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Belda, Eugeni; Sekowska, Agnieszka; Fèvre, François Le; Morgat, Anne; Mornico, Damien; Ouzounis, Christos; Vallenet, David; Médigue, Claudine; Danchin, Antoine
An updated metabolic view of the Bacillus subtilis 168 genome Journal Article
In: Microbiology, vol. 159, no. 4, pp. 757–770, 2013.
@article{belda2013updated,
title = {An updated metabolic view of the Bacillus subtilis 168 genome},
author = {Eugeni Belda and Agnieszka Sekowska and François Le Fèvre and Anne Morgat and Damien Mornico and Christos Ouzounis and David Vallenet and Claudine Médigue and Antoine Danchin},
year = {2013},
date = {2013-01-01},
journal = {Microbiology},
volume = {159},
number = {4},
pages = {757–770},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Zoropogui, Anthony; Pujic, Petar; Normand, Philippe; Barbe, Valérie; Belli, Patrick; Graindorge, Arnault; Roche, David; Vallenet, David; Mangenot, Sophie; Boiron, Patrick; others,
The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen’s lifestyle Journal Article
In: BMC genomics, vol. 14, no. 1, pp. 286, 2013.
@article{zoropogui2013nocardia,
title = {The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen’s lifestyle},
author = {Anthony Zoropogui and Petar Pujic and Philippe Normand and Valérie Barbe and Patrick Belli and Arnault Graindorge and David Roche and David Vallenet and Sophie Mangenot and Patrick Boiron and others},
year = {2013},
date = {2013-01-01},
journal = {BMC genomics},
volume = {14},
number = {1},
pages = {286},
publisher = {BioMed Central London},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Wielgoss, Sébastien; Barrick, Jeffrey E; Tenaillon, Olivier; Wiser, Michael J; Dittmar, W James; Cruveiller, Stéphane; Chane-Woon-Ming, Béatrice; Médigue, Claudine; Lenski, Richard E; Schneider, Dominique
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load Journal Article
In: Proceedings of the National Academy of Sciences, vol. 110, no. 1, pp. 222–227, 2013.
@article{wielgoss2013mutation,
title = {Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load},
author = {Sébastien Wielgoss and Jeffrey E Barrick and Olivier Tenaillon and Michael J Wiser and W James Dittmar and Stéphane Cruveiller and Béatrice Chane-Woon-Ming and Claudine Médigue and Richard E Lenski and Dominique Schneider},
year = {2013},
date = {2013-01-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {110},
number = {1},
pages = {222–227},
publisher = {National Acad Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Ji, Boyang; Gimenez, Gregory; Barbe, Valérie; Vacherie, Beno^ıt; Rouy, Zoé; Amrani, Amira; Fardeau, Marie-Laure; Bertin, Philippe; Alazard, Didier; Leroy, Sabine; others,
Complete genome sequence of the piezophilic, mesophilic, sulfate-reducing bacterium Desulfovibrio hydrothermalis AM13T Journal Article
In: Genome announcements, vol. 1, no. 1, pp. e00226–12, 2013.
@article{ji2013complete,
title = {Complete genome sequence of the piezophilic, mesophilic, sulfate-reducing bacterium Desulfovibrio hydrothermalis AM13T},
author = {Boyang Ji and Gregory Gimenez and Valérie Barbe and Beno^ıt Vacherie and Zoé Rouy and Amira Amrani and Marie-Laure Fardeau and Philippe Bertin and Didier Alazard and Sabine Leroy and others},
year = {2013},
date = {2013-01-01},
journal = {Genome announcements},
volume = {1},
number = {1},
pages = {e00226–12},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
SuHua, Guan SuHua Guan; Gris, C; Cruveiller, S; Pouzet, C; Tasse, L; Leru, A; Maillard, A; Médigue, C; Batut, J; Masson-Boivin, C; others,
Experimental evolution of nodule intracellular infection in legume symbionts. Journal Article
In: vol. 7, no. 7, pp. 1367–1377, 2013.
@article{guan2013experimental,
title = {Experimental evolution of nodule intracellular infection in legume symbionts.},
author = {Guan SuHua Guan SuHua and C Gris and S Cruveiller and C Pouzet and L Tasse and A Leru and A Maillard and C Médigue and J Batut and C Masson-Boivin and others},
year = {2013},
date = {2013-01-01},
volume = {7},
number = {7},
pages = {1367–1377},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Leikoski, Niina; Liu, Liwei; Jokela, Jouni; Wahlsten, Matti; Gugger, Muriel; Calteau, Alexandra; Permi, Perttu; Kerfeld, Cheryl A; Sivonen, Kaarina; Fewer, David P
Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides Journal Article
In: Chemistry & biology, vol. 20, no. 8, pp. 1033–1043, 2013.
@article{leikoski2013genome,
title = {Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides},
author = {Niina Leikoski and Liwei Liu and Jouni Jokela and Matti Wahlsten and Muriel Gugger and Alexandra Calteau and Perttu Permi and Cheryl A Kerfeld and Kaarina Sivonen and David P Fewer},
year = {2013},
date = {2013-01-01},
journal = {Chemistry & biology},
volume = {20},
number = {8},
pages = {1033–1043},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Lanois, Anne; Ogier, Jean-Claude; Gouzy, Jérome; Laroui, Christine; Rouy, Zoé; Givaudan, Alain; Gaudriault, Sophie
Draft genome sequence and annotation of the entomopathogenic bacterium Xenorhabdus nematophila strain F1 Journal Article
In: Genome announcements, vol. 1, no. 3, pp. e00342–13, 2013.
@article{lanois2013draft,
title = {Draft genome sequence and annotation of the entomopathogenic bacterium Xenorhabdus nematophila strain F1},
author = {Anne Lanois and Jean-Claude Ogier and Jérome Gouzy and Christine Laroui and Zoé Rouy and Alain Givaudan and Sophie Gaudriault},
year = {2013},
date = {2013-01-01},
journal = {Genome announcements},
volume = {1},
number = {3},
pages = {e00342–13},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Sugawara, Masayuki; Epstein, Brendan; Badgley, Brian D; Unno, Tatsuya; Xu, Lei; Reese, Jennifer; Gyaneshwar, Prasad; Denny, Roxanne; Mudge, Joann; Bharti, Arvind K; others,
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies Journal Article
In: Genome biology, vol. 14, no. 2, pp. R17, 2013.
@article{sugawara2013comparative,
title = {Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies},
author = {Masayuki Sugawara and Brendan Epstein and Brian D Badgley and Tatsuya Unno and Lei Xu and Jennifer Reese and Prasad Gyaneshwar and Roxanne Denny and Joann Mudge and Arvind K Bharti and others},
year = {2013},
date = {2013-01-01},
journal = {Genome biology},
volume = {14},
number = {2},
pages = {R17},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Gac, Mickael; Cooper, Tim F; Cruveiller, Stéphane; Médigue, Claudine; Schneider, Dominique
Evolutionary history and genetic parallelism affect correlated responses to evolution Journal Article
In: Molecular ecology, vol. 22, no. 12, pp. 3292–3303, 2013.
@article{gac2013evolutionary,
title = {Evolutionary history and genetic parallelism affect correlated responses to evolution},
author = {Mickael Gac and Tim F Cooper and Stéphane Cruveiller and Claudine Médigue and Dominique Schneider},
year = {2013},
date = {2013-01-01},
journal = {Molecular ecology},
volume = {22},
number = {12},
pages = {3292–3303},
publisher = {Wiley Online Library},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Goudenège, David; Labreuche, Yannick; Krin, Evelyne; Ansquer, Dominique; Mangenot, Sophie; Calteau, Alexandra; Médigue, Claudine; Mazel, Didier; Polz, Martin F; Roux, Frédérique Le
Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits Journal Article
In: The ISME journal, vol. 7, no. 10, pp. 1985–1996, 2013.
@article{goudenege2013comparative,
title = {Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits},
author = {David Goudenège and Yannick Labreuche and Evelyne Krin and Dominique Ansquer and Sophie Mangenot and Alexandra Calteau and Claudine Médigue and Didier Mazel and Martin F Polz and Frédérique Le Roux},
year = {2013},
date = {2013-01-01},
journal = {The ISME journal},
volume = {7},
number = {10},
pages = {1985–1996},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Andres, Jérémy; Arsene-Ploetze, Florence; Barbe, Valerie; Brochier-Armanet, Celine; Cleiss-Arnold, Jessica; Coppee, Jean-Yves; Dillies, Marie-Agnès; Geist, Lucie; Joublin, Aurélie; Koechler, Sandrine; others,
Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26 Journal Article
In: Genome biology and evolution, vol. 5, no. 5, pp. 934–953, 2013.
@article{andres2013life,
title = {Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26},
author = {Jérémy Andres and Florence Arsene-Ploetze and Valerie Barbe and Celine Brochier-Armanet and Jessica Cleiss-Arnold and Jean-Yves Coppee and Marie-Agnès Dillies and Lucie Geist and Aurélie Joublin and Sandrine Koechler and others},
year = {2013},
date = {2013-01-01},
journal = {Genome biology and evolution},
volume = {5},
number = {5},
pages = {934–953},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Amin, Oulfat; Fardeau, Marie-Laure; Valette, Odile; Hirschler-Réa, Agnès; Barbe, Valérie; Médigue, Claudine; Vacherie, Benoit; Ollivier, Bernard; Bertin, Philippe N; Dolla, Alain
Genome sequence of the sulfate-reducing bacterium Desulfotomaculum hydrothermale LAM5T Journal Article
In: Genome announcements, vol. 1, no. 1, pp. e00114–12, 2013.
@article{amin2013genome,
title = {Genome sequence of the sulfate-reducing bacterium Desulfotomaculum hydrothermale LAM5T},
author = {Oulfat Amin and Marie-Laure Fardeau and Odile Valette and Agnès Hirschler-Réa and Valérie Barbe and Claudine Médigue and Benoit Vacherie and Bernard Ollivier and Philippe N Bertin and Alain Dolla},
year = {2013},
date = {2013-01-01},
journal = {Genome announcements},
volume = {1},
number = {1},
pages = {e00114–12},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Humbert, Jean-François; Barbe, Valérie; Latifi, Amel; Gugger, Muriel; Calteau, Alexandra; Coursin, Therese; Lajus, Aurélie; Castelli, Vanina; Oztas, Sophie; Samson, Gaëlle; others,
A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa Journal Article
In: PLoS One, vol. 8, no. 8, pp. e70747, 2013.
@article{humbert2013tribute,
title = {A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa},
author = {Jean-François Humbert and Valérie Barbe and Amel Latifi and Muriel Gugger and Alexandra Calteau and Therese Coursin and Aurélie Lajus and Vanina Castelli and Sophie Oztas and Gaëlle Samson and others},
year = {2013},
date = {2013-01-01},
journal = {PLoS One},
volume = {8},
number = {8},
pages = {e70747},
publisher = {Public Library of Science},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Shih, Patrick M; Wu, Dongying; Latifi, Amel; Axen, Seth D; Fewer, David P; Talla, Emmanuel; Calteau, Alexandra; Cai, Fei; de Marsac, Nicole Tandeau; Rippka, Rosmarie; others,
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing Journal Article
In: Proceedings of the National Academy of Sciences, vol. 110, no. 3, pp. 1053–1058, 2013.
@article{shih2013improving,
title = {Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing},
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journal = {Proceedings of the National Academy of Sciences},
volume = {110},
number = {3},
pages = {1053–1058},
publisher = {National Academy of Sciences},
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MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data Journal Article
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title = {MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data},
author = {David Vallenet and Eugeni Belda and Alexandra Calteau and Stéphane Cruveiller and Stefan Engelen and Aurélie Lajus and François Le Fèvre and Cyrille Longin and Damien Mornico and David Roche and others},
year = {2013},
date = {2013-01-01},
journal = {Nucleic acids research},
volume = {41},
number = {D1},
pages = {D636–D647},
publisher = {Oxford University Press},
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Ailloud, Florent; Cellier, Gilles; Roche, David; Allen, Caitilyn; Prior, Philippe
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title = {Glancing at host adaptation in# Ralstonia solanacearum# through comparative genomics of highly host-adapted lineages},
author = {Florent Ailloud and Gilles Cellier and David Roche and Caitilyn Allen and Philippe Prior},
year = {2013},
date = {2013-01-01},
journal = {Phytopathology},
volume = {103},
number = {6},
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Maynaud, Géraldine; Brunel, Brigitte; Mornico, Damien; Durot, Maxime; Severac, Dany; Dubois, Emeric; Navarro, Elisabeth; Cleyet-Marel, Jean-Claude; Quéré, Antoine Le
Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure Journal Article
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title = {Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure},
author = {Géraldine Maynaud and Brigitte Brunel and Damien Mornico and Maxime Durot and Dany Severac and Emeric Dubois and Elisabeth Navarro and Jean-Claude Cleyet-Marel and Antoine Le Quéré},
year = {2013},
date = {2013-01-01},
journal = {BMC genomics},
volume = {14},
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Supply, Philip; Marceau, Michael; Mangenot, Sophie; Roche, David; Rouanet, Carine; Khanna, Varun; Majlessi, Laleh; Criscuolo, Alexis; Tap, Julien; Pawlik, Alexandre; others,
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis Journal Article
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title = {Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis},
author = {Philip Supply and Michael Marceau and Sophie Mangenot and David Roche and Carine Rouanet and Varun Khanna and Laleh Majlessi and Alexis Criscuolo and Julien Tap and Alexandre Pawlik and others},
year = {2013},
date = {2013-01-01},
journal = {Nature genetics},
volume = {45},
number = {2},
pages = {172–179},
publisher = {Nature Publishing Group},
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2012
Marx, Christopher J; Bringel, Françoise; Chistoserdova, Ludmila; Moulin, Lionel; Haque, Muhammad Farhan Ul; Fleischman, Darrell E; Gruffaz, Christelle; Jourand, Philippe; Knief, Claudia; Lee, Ming-Chun; others,
Complete genome sequences of six strains of the genus Methylobacterium Journal Article
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title = {Complete genome sequences of six strains of the genus Methylobacterium},
author = {Christopher J Marx and Françoise Bringel and Ludmila Chistoserdova and Lionel Moulin and Muhammad Farhan Ul Haque and Darrell E Fleischman and Christelle Gruffaz and Philippe Jourand and Claudia Knief and Ming-Chun Lee and others},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
volume = {194},
number = {17},
pages = {4746},
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Bustos, Patricia; Lozano, Luis; Barbe, Valérie; Minard, Víctor; Tran, Florence-Hélène; Voronin, Denis; Rouy, Zoé; Wisniewski-Dyé, Florence; Raquin, Vincent; Mavingui, Guillaume Patrick; others,
Whole-Genome Sequence of Wolbachia Journal Article
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title = {Whole-Genome Sequence of Wolbachia},
author = {Patricia Bustos and Luis Lozano and Valérie Barbe and Víctor Minard and Florence-Hélène Tran and Denis Voronin and Zoé Rouy and Florence Wisniewski-Dyé and Vincent Raquin and Guillaume Patrick Mavingui and others},
year = {2012},
date = {2012-01-01},
journal = {J. Bacteriol},
volume = {194},
number = {7},
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Chouaia, Bessem; Crotti, Elena; Brusetti, Lorenzo; Daffonchio, Daniele; Essoussi, Imen; Nouioui, Imen; Sbissi, Imed; Ghodhbane-Gtari, Faten; Gtari, Maher; Vacherie, Benoit; others,
Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium Journal Article
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title = {Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium},
author = {Bessem Chouaia and Elena Crotti and Lorenzo Brusetti and Daniele Daffonchio and Imen Essoussi and Imen Nouioui and Imed Sbissi and Faten Ghodhbane-Gtari and Maher Gtari and Benoit Vacherie and others},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
volume = {194},
number = {10},
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publisher = {Am Soc Microbiol},
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Khadem, Ahmad F; Wieczorek, Adam S; Pol, Arjan; Vuilleumier, Stéphane; Harhangi, Harry R; Dunfield, Peter F; Kalyuzhnaya, Marina G; Murrell, J Colin; Francoijs, Kees-Jan; Stunnenberg, Henk G; others,
Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV Journal Article
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title = {Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV},
author = {Ahmad F Khadem and Adam S Wieczorek and Arjan Pol and Stéphane Vuilleumier and Harry R Harhangi and Peter F Dunfield and Marina G Kalyuzhnaya and J Colin Murrell and Kees-Jan Francoijs and Henk G Stunnenberg and others},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
volume = {194},
number = {14},
pages = {3729–3730},
publisher = {Am Soc Microbiol},
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Engelen, Stefan; Vallenet, David; Médigue, Claudine; Danchin, Antoine
Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC Journal Article
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title = {Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC},
author = {Stefan Engelen and David Vallenet and Claudine Médigue and Antoine Danchin},
year = {2012},
date = {2012-01-01},
journal = {BMC genomics},
volume = {13},
number = {1},
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Grimaud, Regis; Ghiglione, Jean-François; Cagnon, Christine; Lauga, Béatrice; Vaysse, Pierre-Joseph; Rodriguez-Blanco, Arturo; Mangenot, Sophie; Cruveiller, Stephane; Barbe, Valérie; Duran, Robert; others,
Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds Journal Article
In: Journal of bacteriology, vol. 194, no. 13, pp. 3539–3540, 2012.
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title = {Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds},
author = {Regis Grimaud and Jean-François Ghiglione and Christine Cagnon and Béatrice Lauga and Pierre-Joseph Vaysse and Arturo Rodriguez-Blanco and Sophie Mangenot and Stephane Cruveiller and Valérie Barbe and Robert Duran and others},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
volume = {194},
number = {13},
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publisher = {Am Soc Microbiol},
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Zoropogui, Anthony; Pujic, Petar; Normand, Philippe; Barbe, Valérie; Beaman, Blaine; Beaman, LoVelle; Boiron, Patrick; Colinon, Céline; Deredjian, Amélie; Graindorge, Arnault; others,
Genome sequence of the human-and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2 Journal Article
In: Journal of bacteriology, vol. 194, no. 8, pp. 2098–2099, 2012.
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title = {Genome sequence of the human-and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2},
author = {Anthony Zoropogui and Petar Pujic and Philippe Normand and Valérie Barbe and Blaine Beaman and LoVelle Beaman and Patrick Boiron and Céline Colinon and Amélie Deredjian and Arnault Graindorge and others},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
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number = {8},
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Wisniewski-Dyé, Florence; Lozano, Luis; Acosta-Cruz, Erika; Borland, Stéphanie; Drogue, Beno^ıt; Prigent-Combaret, Claire; Rouy, Zoé; Barbe, Valérie; Herrera, Alberto Mendoza; González, Victor; others,
Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation Journal Article
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@article{wisniewski2012genome,
title = {Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation},
author = {Florence Wisniewski-Dyé and Luis Lozano and Erika Acosta-Cruz and Stéphanie Borland and Beno^ıt Drogue and Claire Prigent-Combaret and Zoé Rouy and Valérie Barbe and Alberto Mendoza Herrera and Victor González and others},
year = {2012},
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Vuilleumier, Stéphane; Khmelenina, Valentina N; Bringel, Françoise; Reshetnikov, Alexandr S; Lajus, Aurélie; Mangenot, Sophie; Rouy, Zoé; Camp, Huub JM Op; Jetten, Mike SM; Dispirito, Alan A; others,
Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z Journal Article
In: Journal of bacteriology, vol. 194, no. 2, pp. 551–552, 2012.
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title = {Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z},
author = {Stéphane Vuilleumier and Valentina N Khmelenina and Françoise Bringel and Alexandr S Reshetnikov and Aurélie Lajus and Sophie Mangenot and Zoé Rouy and Huub JM Op Camp and Mike SM Jetten and Alan A Dispirito and others},
year = {2012},
date = {2012-01-01},
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Normand, Philippe; Gury, Jérôme; Pujic, Petar; Chouaia, Bessem; Crotti, Elena; Brusetti, Lorenzo; Daffonchio, Daniele; Vacherie, Benoit; Barbe, Valérie; Médigue, Claudine; others,
Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces Journal Article
In: Journal of bacteriology, vol. 194, no. 17, pp. 4773–4774, 2012.
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title = {Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces},
author = {Philippe Normand and Jérôme Gury and Petar Pujic and Bessem Chouaia and Elena Crotti and Lorenzo Brusetti and Daniele Daffonchio and Benoit Vacherie and Valérie Barbe and Claudine Médigue and others},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
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Fevre, François Le; Mornico, Damien; Belda, Eugeni; Vallenet, David; Médigue, Claudine
From automatic and expert annotation to the reconstruction of genome-scale metabolic networks and models Journal Article
In: ModellingComplex BiologicalSystems, 2012.
@article{le2012automatic,
title = {From automatic and expert annotation to the reconstruction of genome-scale metabolic networks and models},
author = {François Le Fevre and Damien Mornico and Eugeni Belda and David Vallenet and Claudine Médigue},
year = {2012},
date = {2012-01-01},
journal = {ModellingComplex BiologicalSystems},
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Smith, Adam Alexander Thil; Belda, Eugeni; Viari, Alain; Medigue, Claudine; Vallenet, David
The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes Journal Article
In: PLoS computational biology, vol. 8, no. 5, pp. e1002540, 2012.
@article{smith2012canoe,
title = {The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes},
author = {Adam Alexander Thil Smith and Eugeni Belda and Alain Viari and Claudine Medigue and David Vallenet},
year = {2012},
date = {2012-01-01},
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Alonso-Vega, Pablo; Normand, Philippe; Bacigalupe, Rodrigo; Pujic, Petar; Lajus, Aurelie; Vallenet, David; Carro, Lorena; Coll, Pedro; Trujillo, Martha E
Genome sequence of Micromonospora lupini Lupac 08, isolated from root nodules of Lupinus angustifolius Journal Article
In: Journal of bacteriology, vol. 194, no. 15, pp. 4135–4135, 2012.
@article{alonso2012genome,
title = {Genome sequence of Micromonospora lupini Lupac 08, isolated from root nodules of Lupinus angustifolius},
author = {Pablo Alonso-Vega and Philippe Normand and Rodrigo Bacigalupe and Petar Pujic and Aurelie Lajus and David Vallenet and Lorena Carro and Pedro Coll and Martha E Trujillo},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
volume = {194},
number = {15},
pages = {4135–4135},
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Remenant, Beno^ıt; Babujee, Lavanya; Lajus, Aurélie; Médigue, Claudine; Prior, Philippe; Allen, Caitilyn
Sequencing of K60, type strain of the major plant pathogen Ralstonia solanacearum Journal Article
In: Journal of bacteriology, vol. 194, no. 10, pp. 2742–2743, 2012.
@article{remenant2012sequencing,
title = {Sequencing of K60, type strain of the major plant pathogen Ralstonia solanacearum},
author = {Beno^ıt Remenant and Lavanya Babujee and Aurélie Lajus and Claudine Médigue and Philippe Prior and Caitilyn Allen},
year = {2012},
date = {2012-01-01},
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number = {10},
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Wisniewski-Dyé, Florence; Lozano, Luis; Acosta-Cruz, Erika; Borland, Stéphanie; Drogue, Beno^ıt; Prigent-Combaret, Claire; Rouy, Zoé; Barbe, Valérie; Herrera, Alberto Mendoza; González, Victor; others,
Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation Journal Article
In: Genes, vol. 3, no. 4, pp. 576–602, 2012.
@article{wisniewski2012genomeb,
title = {Genome sequence of Azospirillum brasilense CBG497 and comparative analyses of Azospirillum core and accessory genomes provide insight into niche adaptation},
author = {Florence Wisniewski-Dyé and Luis Lozano and Erika Acosta-Cruz and Stéphanie Borland and Beno^ıt Drogue and Claire Prigent-Combaret and Zoé Rouy and Valérie Barbe and Alberto Mendoza Herrera and Victor González and others},
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Kristiansen, Rikke; Nguyen, Hien Thi Thu; Saunders, Aaron Marc; Nielsen, Jeppe Lund; Wimmer, Reinhard; Le, Vang; Petrovski, Steve; McIlroy, Simon Jon; Seviour, Robert; Calteau, Alexandra; others,
Metabolic model for an unusual and versatile Tetrasphaera involved in enhanced biological phosphorus removal based on whole genome sequencing Proceedings Article
In: 14th International Symposium on Microbial Ecology, 2012.
@inproceedings{kristiansen2012metabolic,
title = {Metabolic model for an unusual and versatile Tetrasphaera involved in enhanced biological phosphorus removal based on whole genome sequencing},
author = {Rikke Kristiansen and Hien Thi Thu Nguyen and Aaron Marc Saunders and Jeppe Lund Nielsen and Reinhard Wimmer and Vang Le and Steve Petrovski and Simon Jon McIlroy and Robert Seviour and Alexandra Calteau and others},
year = {2012},
date = {2012-01-01},
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Fournier, Pierre-Edouard; Karkouri, Khalid El; Robert, Catherine; Médigue, Claudine; Raoult, Didier
Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis Journal Article
In: Journal of bacteriology, vol. 194, no. 6, pp. 1612–1612, 2012.
@article{fournier2012complete,
title = {Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis},
author = {Pierre-Edouard Fournier and Khalid El Karkouri and Catherine Robert and Claudine Médigue and Didier Raoult},
year = {2012},
date = {2012-01-01},
journal = {Journal of bacteriology},
volume = {194},
number = {6},
pages = {1612–1612},
publisher = {Am Soc Microbiol},
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Smith, AAT; Belda, E; Viari, A; Medigue, C; Vallenet, D
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Journal Article
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@article{smith2012canoeb,
title = {The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote},
author = {AAT Smith and E Belda and A Viari and C Medigue and D Vallenet},
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Ghignone, Stefano; Salvioli, Alessandra; Anca, Iulia; Lumini, Erica; Ortu, Giuseppe; Petiti, Luca; Cruveiller, Stéphane; Bianciotto, Valeria; Piffanelli, Pietro; Lanfranco, Luisa; others,
The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions Journal Article
In: The ISME journal, vol. 6, no. 1, pp. 136–145, 2012.
@article{ghignone2012genome,
title = {The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions},
author = {Stefano Ghignone and Alessandra Salvioli and Iulia Anca and Erica Lumini and Giuseppe Ortu and Luca Petiti and Stéphane Cruveiller and Valeria Bianciotto and Pietro Piffanelli and Luisa Lanfranco and others},
year = {2012},
date = {2012-01-01},
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