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Tannier, Eric; Bazin, Adelme; Davín, Adrián; Guéguen, Laurent; Bérard, Sèverine; Chauve, Cedric
Ancestral genome organization as a diagnosis tool for phylogenomics Miscellaneous
2020.
@misc{tannier2020ancestral,
title = {Ancestral genome organization as a diagnosis tool for phylogenomics},
author = {Eric Tannier and Adelme Bazin and Adrián Davín and Laurent Guéguen and Sèverine Bérard and Cedric Chauve},
year = {2020},
date = {2020-01-01},
publisher = {No commercial publisher| Authors open access book},
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pubstate = {published},
tppubtype = {misc}
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Della-Negra, Oriane; Chaussonnerie, Sébastien; Fonknechten, Nuria; Barbance, Agnès; Muselet, Delphine; Martin, Déborah E; Fouteau, Stéphanie; Fischer, Cécile; Saaidi, Pierre-Loïc; Paslier, Denis Le
Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp. 86 with a switch from ring-opening dechlorination to reductive sulfidation activity Journal Article
In: Scientific Reports, vol. 10, no. 1, pp. 1–14, 2020.
@article{della2020transformation,
title = {Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp. 86 with a switch from ring-opening dechlorination to reductive sulfidation activity},
author = {Oriane Della-Negra and Sébastien Chaussonnerie and Nuria Fonknechten and Agnès Barbance and Delphine Muselet and Déborah E Martin and Stéphanie Fouteau and Cécile Fischer and Pierre-Loïc Saaidi and Denis Le Paslier},
year = {2020},
date = {2020-01-01},
journal = {Scientific Reports},
volume = {10},
number = {1},
pages = {1–14},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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Monteil, Caroline L; Grouzdev, Denis S; Perriere, Guy; Alonso, Béatrice; Rouy, Zoé; Cruveiller, Stéphane; Ginet, Nicolas; Pignol, David; Lefevre, Christopher T
Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria Journal Article
In: The ISME journal, vol. 14, no. 7, pp. 1783–1794, 2020.
@article{monteil2020repeated,
title = {Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria},
author = {Caroline L Monteil and Denis S Grouzdev and Guy Perriere and Béatrice Alonso and Zoé Rouy and Stéphane Cruveiller and Nicolas Ginet and David Pignol and Christopher T Lefevre},
year = {2020},
date = {2020-01-01},
journal = {The ISME journal},
volume = {14},
number = {7},
pages = {1783–1794},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Teulet, Albin; Gully, Djamel; Rouy, Zoe; Camuel, Alicia; Koebnik, Ralf; Giraud, Eric; Lassalle, Florent
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium Journal Article
In: Microbial Genomics, vol. 6, no. 9, pp. e000407, 2020.
@article{teulet2020phylogenetic,
title = {Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium},
author = {Albin Teulet and Djamel Gully and Zoe Rouy and Alicia Camuel and Ralf Koebnik and Eric Giraud and Florent Lassalle},
year = {2020},
date = {2020-01-01},
journal = {Microbial Genomics},
volume = {6},
number = {9},
pages = {e000407},
publisher = {Microbiology Society},
keywords = {},
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Tang, Mingxing; Bouchez, Olivier; Cruveiller, Stéphane; Masson-Boivin, Catherine; Capela, Delphine
Modulation of quorum sensing as an adaptation to nodule cell infection during experimental evolution of legume symbionts Journal Article
In: MBio, vol. 11, no. 1, pp. e03129–19, 2020.
@article{tang2020modulation,
title = {Modulation of quorum sensing as an adaptation to nodule cell infection during experimental evolution of legume symbionts},
author = {Mingxing Tang and Olivier Bouchez and Stéphane Cruveiller and Catherine Masson-Boivin and Delphine Capela},
year = {2020},
date = {2020-01-01},
journal = {MBio},
volume = {11},
number = {1},
pages = {e03129–19},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
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Bottai, Daria; Frigui, Wafa; Sayes, Fadel; Luca, Mariagrazia Di; Spadoni, Dalila; Pawlik, Alexandre; Zoppo, Marina; Orgeur, Mickael; Khanna, Varun; Hardy, David; others,
TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages Journal Article
In: Nature communications, vol. 11, no. 1, pp. 1–14, 2020.
@article{bottai2020tbd1,
title = {TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages},
author = {Daria Bottai and Wafa Frigui and Fadel Sayes and Mariagrazia Di Luca and Dalila Spadoni and Alexandre Pawlik and Marina Zoppo and Mickael Orgeur and Varun Khanna and David Hardy and others},
year = {2020},
date = {2020-01-01},
journal = {Nature communications},
volume = {11},
number = {1},
pages = {1–14},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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Freel, Kelle C; Fouteau, Stéphanie; Roche, David; Farasin, Julien; Huber, Aline; Koechler, Sandrine; Peres, Martina; Chiboub, Olfa; Varet, Hugo; Proux, Caroline; others,
Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2 Journal Article
In: Microbial genomics, vol. 6, no. 10, 2020.
@article{freel2020effect,
title = {Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2},
author = {Kelle C Freel and Stéphanie Fouteau and David Roche and Julien Farasin and Aline Huber and Sandrine Koechler and Martina Peres and Olfa Chiboub and Hugo Varet and Caroline Proux and others},
year = {2020},
date = {2020-01-01},
journal = {Microbial genomics},
volume = {6},
number = {10},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
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Psomopoulos, Fotis E; Helden, Jacques; Médigue, Claudine; Chasapi, Anastasia; Ouzounis, Christos A
Ancestral state reconstruction of metabolic pathways across pangenome ensembles Journal Article
In: Microbial genomics, vol. 6, no. 11, 2020.
@article{psomopoulos2020ancestral,
title = {Ancestral state reconstruction of metabolic pathways across pangenome ensembles},
author = {Fotis E Psomopoulos and Jacques Helden and Claudine Médigue and Anastasia Chasapi and Christos A Ouzounis},
year = {2020},
date = {2020-01-01},
journal = {Microbial genomics},
volume = {6},
number = {11},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
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Muir, Alastair; Gurung, Ishwori; Cehovin, Ana; Bazin, Adelme; Vallenet, David; Pelicic, Vladimir
Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen Journal Article
In: Nature Communications, vol. 11, no. 1, pp. 1–13, 2020.
@article{muir2020construction,
title = {Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen},
author = {Alastair Muir and Ishwori Gurung and Ana Cehovin and Adelme Bazin and David Vallenet and Vladimir Pelicic},
year = {2020},
date = {2020-01-01},
journal = {Nature Communications},
volume = {11},
number = {1},
pages = {1–13},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2019
Quéré, Antoine Le; Gully, Djamel; Teulet, Albin; Navarro, Elisabeth; Gargani, Daniel; Fardoux, Joël; Cruveiller, Stéphane; Neyra, Marc; Giraud, Eric; Wade, Tatiana Krasova
Complete genome sequence of Bradyrhizobium sp. strain ORS3257, an efficient nitrogen-fixing bacterium isolated from cowpea in Senegal Journal Article
In: Microbiology resource announcements, vol. 8, no. 3, pp. e01449–18, 2019.
@article{le2019complete,
title = {Complete genome sequence of Bradyrhizobium sp. strain ORS3257, an efficient nitrogen-fixing bacterium isolated from cowpea in Senegal},
author = {Antoine Le Quéré and Djamel Gully and Albin Teulet and Elisabeth Navarro and Daniel Gargani and Joël Fardoux and Stéphane Cruveiller and Marc Neyra and Eric Giraud and Tatiana Krasova Wade},
year = {2019},
date = {2019-01-01},
journal = {Microbiology resource announcements},
volume = {8},
number = {3},
pages = {e01449–18},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
pubstate = {published},
tppubtype = {article}
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Li, Meng; Calteau, Alexandra; Semchonok, Dmitry A; Witt, Thomas A; Nguyen, Jonathan T; Sassoon, Nathalie; Boekema, Egbert J; Whitelegge, Julian; Gugger, Muriel; Bruce, Barry D
Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria Journal Article
In: Nature Plants, vol. 5, no. 12, pp. 1309–1319, 2019.
@article{li2019physiological,
title = {Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria},
author = {Meng Li and Alexandra Calteau and Dmitry A Semchonok and Thomas A Witt and Jonathan T Nguyen and Nathalie Sassoon and Egbert J Boekema and Julian Whitelegge and Muriel Gugger and Barry D Bruce},
year = {2019},
date = {2019-01-01},
journal = {Nature Plants},
volume = {5},
number = {12},
pages = {1309–1319},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Bourrel, Anne Sophie; Poirel, Laurent; Royer, Guilhem; Darty, Mélanie; Vuillemin, Xavier; Kieffer, Nicolas; Clermont, Olivier; Denamur, Erick; Nordmann, Patrice; Decousser, Jean-Winoc; others,
Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways Journal Article
In: Journal of Antimicrobial Chemotherapy, vol. 74, no. 6, pp. 1521–1530, 2019.
@article{bourrel2019colistin,
title = {Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways},
author = {Anne Sophie Bourrel and Laurent Poirel and Guilhem Royer and Mélanie Darty and Xavier Vuillemin and Nicolas Kieffer and Olivier Clermont and Erick Denamur and Patrice Nordmann and Jean-Winoc Decousser and others},
year = {2019},
date = {2019-01-01},
journal = {Journal of Antimicrobial Chemotherapy},
volume = {74},
number = {6},
pages = {1521–1530},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mayol, Ombeline; Bastard, Karine; Beloti, Lilian; Frese, Amina; Turkenburg, Johan P; Petit, Jean-Louis; Mariage, Aline; Debard, Adrien; Pellouin, Virginie; Perret, Alain; others,
A family of native amine dehydrogenases for the asymmetric reductive amination of ketones Journal Article
In: Nature Catalysis, vol. 2, no. 4, pp. 324–333, 2019.
@article{mayol2019family,
title = {A family of native amine dehydrogenases for the asymmetric reductive amination of ketones},
author = {Ombeline Mayol and Karine Bastard and Lilian Beloti and Amina Frese and Johan P Turkenburg and Jean-Louis Petit and Aline Mariage and Adrien Debard and Virginie Pellouin and Alain Perret and others},
year = {2019},
date = {2019-01-01},
journal = {Nature Catalysis},
volume = {2},
number = {4},
pages = {324–333},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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Pujic, Petar; Alloisio, Nicole; Fournier, Pascale; Roche, David; Sghaier, Haitham; Miotello, Guylaine; Armengaud, Jean; Berry, Alison M; Normand, Philippe
Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton Journal Article
In: Environmental microbiology, vol. 21, no. 9, pp. 3328–3345, 2019.
@article{pujic2019omics,
title = {Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton},
author = {Petar Pujic and Nicole Alloisio and Pascale Fournier and David Roche and Haitham Sghaier and Guylaine Miotello and Jean Armengaud and Alison M Berry and Philippe Normand},
year = {2019},
date = {2019-01-01},
journal = {Environmental microbiology},
volume = {21},
number = {9},
pages = {3328–3345},
publisher = {John Wiley & Sons, Inc. Hoboken, USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
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Monteil, Caroline L; Vallenet, David; Menguy, Nicolas; Benzerara, Karim; Barbe, Valérie; Fouteau, Stéphanie; Cruaud, Corinne; Floriani, Magali; Viollier, Eric; Adryanczyk, Géraldine; others,
Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist Journal Article
In: Nature microbiology, vol. 4, no. 7, pp. 1088–1095, 2019.
@article{monteil2019ectosymbiotic,
title = {Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist},
author = {Caroline L Monteil and David Vallenet and Nicolas Menguy and Karim Benzerara and Valérie Barbe and Stéphanie Fouteau and Corinne Cruaud and Magali Floriani and Eric Viollier and Géraldine Adryanczyk and others},
year = {2019},
date = {2019-01-01},
journal = {Nature microbiology},
volume = {4},
number = {7},
pages = {1088–1095},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Billard-Pomares, Typhaine; Clermont, Olivier; Castellanos, Miguel; Magdoud, Fatma; Royer, Guilhem; Condamine, Bénédicte; Fouteau, Stéphanie; Barbe, Valérie; Roche, David; Cruveiller, Stéphane; others,
The arginine deiminase operon is responsible for a fitness trade-off in extended-spectrum-β-lactamase-producing strains of Escherichia coli Journal Article
In: Antimicrobial agents and chemotherapy, vol. 63, no. 8, pp. e00635–19, 2019.
@article{billard2019arginine,
title = {The arginine deiminase operon is responsible for a fitness trade-off in extended-spectrum-β-lactamase-producing strains of Escherichia coli},
author = {Typhaine Billard-Pomares and Olivier Clermont and Miguel Castellanos and Fatma Magdoud and Guilhem Royer and Bénédicte Condamine and Stéphanie Fouteau and Valérie Barbe and David Roche and Stéphane Cruveiller and others},
year = {2019},
date = {2019-01-01},
journal = {Antimicrobial agents and chemotherapy},
volume = {63},
number = {8},
pages = {e00635–19},
publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
keywords = {},
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Belkhelfa, Sophia; Roche, David; Dubois, Ivan; Berger, Anne; Delmas, Valérie Anne; Cattolico, Laurence; Perret, Alain; Labadie, Karine; Perdereau, Aude Cécile; Darii, Ekaterina; others,
Continuous culture adaptation of Methylobacterium extorquens AM1 and TK 0001 to very high methanol concentrations Journal Article
In: Frontiers in Microbiology, vol. 10, pp. 1313, 2019.
@article{belkhelfa2019continuous,
title = {Continuous culture adaptation of Methylobacterium extorquens AM1 and TK 0001 to very high methanol concentrations},
author = {Sophia Belkhelfa and David Roche and Ivan Dubois and Anne Berger and Valérie Anne Delmas and Laurence Cattolico and Alain Perret and Karine Labadie and Aude Cécile Perdereau and Ekaterina Darii and others},
year = {2019},
date = {2019-01-01},
journal = {Frontiers in Microbiology},
volume = {10},
pages = {1313},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Branger, Catherine; Ledda, Alice; Billard-Pomares, Typhaine; Doublet, Beno^ıt; Barbe, Valérie; Roche, David; Médigue, Claudine; Arlet, Guillaume; Denamur, Erick
Specialization of small non-conjugative plasmids in Escherichia coli according to their family types Journal Article
In: Microbial genomics, vol. 5, no. 9, 2019.
@article{branger2019specialization,
title = {Specialization of small non-conjugative plasmids in Escherichia coli according to their family types},
author = {Catherine Branger and Alice Ledda and Typhaine Billard-Pomares and Beno^ıt Doublet and Valérie Barbe and David Roche and Claudine Médigue and Guillaume Arlet and Erick Denamur},
year = {2019},
date = {2019-01-01},
journal = {Microbial genomics},
volume = {5},
number = {9},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
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}
Royer, G; Melloul, E; Roisin, L; Courbin, V; Jacquier, H; Lepeule, R; Coutte, L; Darty, M; Fihman, V; Lim, P; others,
Complete genome sequencing of Enterococcus faecalis strains suggests role of Ebp deletion in infective endocarditis relapse Journal Article
In: Clinical Microbiology and Infection, vol. 25, no. 12, pp. 1565–1567, 2019.
@article{royer2019complete,
title = {Complete genome sequencing of Enterococcus faecalis strains suggests role of Ebp deletion in infective endocarditis relapse},
author = {G Royer and E Melloul and L Roisin and V Courbin and H Jacquier and R Lepeule and L Coutte and M Darty and V Fihman and P Lim and others},
year = {2019},
date = {2019-01-01},
journal = {Clinical Microbiology and Infection},
volume = {25},
number = {12},
pages = {1565–1567},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mahérault, Anne-Claire; Kemble, Harry; Magnan, Mélanie; Gachet, Benoit; Roche, David; Nagard, Hervé Le; Tenaillon, Olivier; Denamur, Erick; Branger, Catherine; Landraud, Luce
Advantage of the F2: A1: B-IncF pandemic plasmid over IncC plasmids in in vitro acquisition and evolution of blaCTX-M gene-bearing plasmids in Escherichia coli Journal Article
In: Antimicrobial agents and chemotherapy, vol. 63, no. 10, pp. e01130–19, 2019.
@article{maherault2019advantage,
title = {Advantage of the F2: A1: B-IncF pandemic plasmid over IncC plasmids in in vitro acquisition and evolution of blaCTX-M gene-bearing plasmids in Escherichia coli},
author = {Anne-Claire Mahérault and Harry Kemble and Mélanie Magnan and Benoit Gachet and David Roche and Hervé Le Nagard and Olivier Tenaillon and Erick Denamur and Catherine Branger and Luce Landraud},
year = {2019},
date = {2019-01-01},
journal = {Antimicrobial agents and chemotherapy},
volume = {63},
number = {10},
pages = {e01130–19},
publisher = {Am Soc Microbiol},
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Kieffer, Nicolas; Royer, Guilhem; Decousser, Jean-Winoc; Bourrel, Anne-Sophie; Palmieri, Mattia; Rosa, Jose-Manuel Ortiz De La; Jacquier, Hervé; Denamur, Erick; Nordmann, Patrice; Poirel, Laurent
mcr-9, an inducible gene encoding an acquired phosphoethanolamine transferase in Escherichia coli, and its origin Journal Article
In: Antimicrobial agents and chemotherapy, vol. 63, no. 9, pp. e00965–19, 2019.
@article{kieffer2019mcr,
title = {mcr-9, an inducible gene encoding an acquired phosphoethanolamine transferase in Escherichia coli, and its origin},
author = {Nicolas Kieffer and Guilhem Royer and Jean-Winoc Decousser and Anne-Sophie Bourrel and Mattia Palmieri and Jose-Manuel Ortiz De La Rosa and Hervé Jacquier and Erick Denamur and Patrice Nordmann and Laurent Poirel},
year = {2019},
date = {2019-01-01},
journal = {Antimicrobial agents and chemotherapy},
volume = {63},
number = {9},
pages = {e00965–19},
publisher = {American Society for Microbiology Journals},
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Illikoud, Nassima; Gohier, Rodérick; Werner, Dalal; Barrachina, Célia; Roche, David; Jaffrès, Emmanuel; Zagorec, Monique
Transcriptome and volatilome analysis during growth of Brochothrix thermosphacta in food: role of food substrate and strain specificity for the expression of spoilage functions Journal Article
In: Frontiers in microbiology, vol. 10, pp. 2527, 2019.
@article{illikoud2019transcriptome,
title = {Transcriptome and volatilome analysis during growth of Brochothrix thermosphacta in food: role of food substrate and strain specificity for the expression of spoilage functions},
author = {Nassima Illikoud and Rodérick Gohier and Dalal Werner and Célia Barrachina and David Roche and Emmanuel Jaffrès and Monique Zagorec},
year = {2019},
date = {2019-01-01},
journal = {Frontiers in microbiology},
volume = {10},
pages = {2527},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
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}
Mahérault, Anne-Claire; Kemble, Harry; Magnan, Mélanie; Gachet, Benoit; Roche, David; Nagard, Hervé Le; Tenaillon, Olivier; Denamur, Erick; Branger, Catherine; Landraud, Luce
In vitro acquisition and evolution of blaCTX-M gene bearing plasmids in Escherichia coli: advantage of the F2: A1: B-IncF pandemic plasmid over IncC plasmids Journal Article
In: Antimicrobial Agents and Chemotherapy, pp. AAC–01130, 2019.
@article{maherault2019vitro,
title = {In vitro acquisition and evolution of blaCTX-M gene bearing plasmids in Escherichia coli: advantage of the F2: A1: B-IncF pandemic plasmid over IncC plasmids},
author = {Anne-Claire Mahérault and Harry Kemble and Mélanie Magnan and Benoit Gachet and David Roche and Hervé Le Nagard and Olivier Tenaillon and Erick Denamur and Catherine Branger and Luce Landraud},
year = {2019},
date = {2019-01-01},
journal = {Antimicrobial Agents and Chemotherapy},
pages = {AAC–01130},
publisher = {Am Soc Microbiol},
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Médigue, Claudine; Calteau, Alexandra; Cruveiller, Stéphane; Gachet, Mathieu; Gautreau, Guillaume; Josso, Adrien; Lajus, Aurélie; Langlois, Jordan; Pereira, Hugo; Planel, Rémi; others,
MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data Journal Article
In: Briefings in bioinformatics, vol. 20, no. 4, pp. 1071–1084, 2019.
@article{medigue2019microscope,
title = {MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data},
author = {Claudine Médigue and Alexandra Calteau and Stéphane Cruveiller and Mathieu Gachet and Guillaume Gautreau and Adrien Josso and Aurélie Lajus and Jordan Langlois and Hugo Pereira and Rémi Planel and others},
year = {2019},
date = {2019-01-01},
journal = {Briefings in bioinformatics},
volume = {20},
number = {4},
pages = {1071–1084},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2018
Branger, Catherine; Ledda, Alice; Billard-Pomares, Typhaine; Doublet, Beno^ıt; Fouteau, Stéphanie; Barbe, Valérie; Roche, David; Cruveiller, Stéphane; Médigue, Claudine; Castellanos, Miguel; others,
Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins Journal Article
In: Microbial genomics, vol. 4, no. 9, 2018.
@article{branger2018extended,
title = {Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins},
author = {Catherine Branger and Alice Ledda and Typhaine Billard-Pomares and Beno^ıt Doublet and Stéphanie Fouteau and Valérie Barbe and David Roche and Stéphane Cruveiller and Claudine Médigue and Miguel Castellanos and others},
year = {2018},
date = {2018-01-01},
journal = {Microbial genomics},
volume = {4},
number = {9},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Royer, G; Decousser, JW; Branger, C; Dubois, M; Médigue, C; Denamur, E; Vallenet, D
PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level Journal Article
In: Microbial Genomics, vol. 4, no. 9, 2018.
@article{royer2018plascope,
title = {PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level},
author = {G Royer and JW Decousser and C Branger and M Dubois and C Médigue and E Denamur and D Vallenet},
year = {2018},
date = {2018-01-01},
journal = {Microbial Genomics},
volume = {4},
number = {9},
publisher = {Microbiology Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Gobet, Angélique; Barbeyron, Tristan; Matard-Mann, Maria; Magdelenat, Ghislaine; Vallenet, David; Duchaud, Eric; Michel, Gurvan
Evolutionary evidence of algal polysaccharide degradation acquisition by Pseudoalteromonas carrageenovora 9T to adapt to macroalgal niches Journal Article
In: Frontiers in microbiology, vol. 9, pp. 2740, 2018.
@article{gobet2018evolutionary,
title = {Evolutionary evidence of algal polysaccharide degradation acquisition by Pseudoalteromonas carrageenovora 9T to adapt to macroalgal niches},
author = {Angélique Gobet and Tristan Barbeyron and Maria Matard-Mann and Ghislaine Magdelenat and David Vallenet and Eric Duchaud and Gurvan Michel},
year = {2018},
date = {2018-01-01},
journal = {Frontiers in microbiology},
volume = {9},
pages = {2740},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Borriss, Rainer; Danchin, Antoine; Harwood, Colin R; Médigue, Claudine; Rocha, Eduardo PC; Sekowska, Agnieszka; Vallenet, David
Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement Journal Article
In: Microbial biotechnology, vol. 11, no. 1, pp. 3–17, 2018.
@article{borriss2018bacillus,
title = {Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement},
author = {Rainer Borriss and Antoine Danchin and Colin R Harwood and Claudine Médigue and Eduardo PC Rocha and Agnieszka Sekowska and David Vallenet},
year = {2018},
date = {2018-01-01},
journal = {Microbial biotechnology},
volume = {11},
number = {1},
pages = {3–17},
publisher = {Wiley Online Library},
keywords = {},
pubstate = {published},
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Bastard, Karine; Isabet, Tatiana; Stura, Enrico A; Legrand, Pierre; Zaparucha, Anne
Structural studies based on two lysine dioxygenases with distinct regioselectivity brings insights into enzyme specificity within the clavaminate synthase-like family Journal Article
In: Scientific reports, vol. 8, no. 1, pp. 1–11, 2018.
@article{bastard2018structural,
title = {Structural studies based on two lysine dioxygenases with distinct regioselectivity brings insights into enzyme specificity within the clavaminate synthase-like family},
author = {Karine Bastard and Tatiana Isabet and Enrico A Stura and Pierre Legrand and Anne Zaparucha},
year = {2018},
date = {2018-01-01},
journal = {Scientific reports},
volume = {8},
number = {1},
pages = {1–11},
publisher = {Nature Publishing Group},
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Dias, Graciela; Bidault, Adeline; Chevalier, Patrick Le; Choquet, Gwenaelle; Sarkissian, Clio Der; Orlando, Ludovic; Medigue, Claudine; Barbe, Valerie; Thompson, Fabiano; Thompson, Cristiane Carneiro; others,
Vibrio tapetis displays an original type IV secretion system in strains pathogenic for bivalve molluscs Journal Article
In: Frontiers in Microbiology, vol. 9, pp. 227, 2018.
@article{dias2018vibrio,
title = {Vibrio tapetis displays an original type IV secretion system in strains pathogenic for bivalve molluscs},
author = {Graciela Dias and Adeline Bidault and Patrick Le Chevalier and Gwenaelle Choquet and Clio Der Sarkissian and Ludovic Orlando and Claudine Medigue and Valerie Barbe and Fabiano Thompson and Cristiane Carneiro Thompson and others},
year = {2018},
date = {2018-01-01},
journal = {Frontiers in Microbiology},
volume = {9},
pages = {227},
publisher = {Frontiers},
keywords = {},
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Turpin, Williams; Weiman, Marion; Guyot, Jean-Pierre; Lajus, Aurélie; Cruveiller, Stéphane; Humblot, Christèle
The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food Journal Article
In: International journal of food microbiology, vol. 266, pp. 346–354, 2018.
@article{turpin2018genomic,
title = {The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food},
author = {Williams Turpin and Marion Weiman and Jean-Pierre Guyot and Aurélie Lajus and Stéphane Cruveiller and Christèle Humblot},
year = {2018},
date = {2018-01-01},
journal = {International journal of food microbiology},
volume = {266},
pages = {346–354},
publisher = {Elsevier},
keywords = {},
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Clerissi, Camille; Touchon, Marie; Capela, Delphine; Tang, Mingxing; Cruveiller, Stéphane; Genthon, Clémence; Lopez-Roques, Céline; Parker, Matthew A; Moulin, Lionel; Masson-Boivin, Catherine; others,
Parallels between experimental and natural evolution of legume symbionts Journal Article
In: Nature communications, vol. 9, no. 1, pp. 1–13, 2018.
@article{clerissi2018parallels,
title = {Parallels between experimental and natural evolution of legume symbionts},
author = {Camille Clerissi and Marie Touchon and Delphine Capela and Mingxing Tang and Stéphane Cruveiller and Clémence Genthon and Céline Lopez-Roques and Matthew A Parker and Lionel Moulin and Catherine Masson-Boivin and others},
year = {2018},
date = {2018-01-01},
journal = {Nature communications},
volume = {9},
number = {1},
pages = {1–13},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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}
Belkhelfa, Sophia; Labadie, Karine; Cruaud, Corinne; Aury, Jean-Marc; Roche, David; Bouzon, Madeleine; Salanoubat, Marcel; Döring, Volker
Complete Genome Sequence of the Facultative Methylotroph Methylobacterium extorquens TK 0001 Isolated from Soil in Poland Journal Article
In: Genome announcements, vol. 6, no. 8, pp. e00018–18, 2018.
@article{belkhelfa2018complete,
title = {Complete Genome Sequence of the Facultative Methylotroph Methylobacterium extorquens TK 0001 Isolated from Soil in Poland},
author = {Sophia Belkhelfa and Karine Labadie and Corinne Cruaud and Jean-Marc Aury and David Roche and Madeleine Bouzon and Marcel Salanoubat and Volker Döring},
year = {2018},
date = {2018-01-01},
journal = {Genome announcements},
volume = {6},
number = {8},
pages = {e00018–18},
publisher = {Am Soc Microbiol},
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pubstate = {published},
tppubtype = {article}
}
Mercier, Jonathan; Josso, Adrien; Médigue, Claudine; Vallenet, David
GROOLS: reactive graph reasoning for genome annotation through biological processes Journal Article
In: BMC bioinformatics, vol. 19, no. 1, pp. 132, 2018.
@article{mercier2018grools,
title = {GROOLS: reactive graph reasoning for genome annotation through biological processes},
author = {Jonathan Mercier and Adrien Josso and Claudine Médigue and David Vallenet},
year = {2018},
date = {2018-01-01},
journal = {BMC bioinformatics},
volume = {19},
number = {1},
pages = {132},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Desroches, M; Royer, G; Roche, D; Mercier-Darty, M; Vallenet, D; Médigue, C; Bastard, K; Rodriguez, C; Clermont, O; Denamur, E; others,
The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification Journal Article
In: mSphere, vol. 3, no. 1, pp. e00553–17, 2018.
@article{desroches2018odyssey,
title = {The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification},
author = {M Desroches and G Royer and D Roche and M Mercier-Darty and D Vallenet and C Médigue and K Bastard and C Rodriguez and O Clermont and E Denamur and others},
year = {2018},
date = {2018-01-01},
journal = {mSphere},
volume = {3},
number = {1},
pages = {e00553–17},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
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}
Krin, Evelyne; Pierlé, Sebastian Aguilar; Sismeiro, Odile; Jagla, Bernd; Dillies, Marie-Agnès; Varet, Hugo; Irazoki, Oihane; Campoy, Susana; Rouy, Zoé; Cruveiller, Stéphane; others,
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation Journal Article
In: BMC genomics, vol. 19, no. 1, pp. 1–18, 2018.
@article{krin2018expansion,
title = {Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation},
author = {Evelyne Krin and Sebastian Aguilar Pierlé and Odile Sismeiro and Bernd Jagla and Marie-Agnès Dillies and Hugo Varet and Oihane Irazoki and Susana Campoy and Zoé Rouy and Stéphane Cruveiller and others},
year = {2018},
date = {2018-01-01},
journal = {BMC genomics},
volume = {19},
number = {1},
pages = {1–18},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Partensky, Frédéric; Six, Christophe; Ratin, Morgane; Garczarek, Laurence; Vaulot, Daniel; Probert, Ian; Calteau, Alexandra; Gourvil, Priscillia; Marie, Dominique; Grébert, Théophile; others,
A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle Journal Article
In: Scientific reports, vol. 8, no. 1, pp. 1–13, 2018.
@article{partensky2018novel,
title = {A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle},
author = {Frédéric Partensky and Christophe Six and Morgane Ratin and Laurence Garczarek and Daniel Vaulot and Ian Probert and Alexandra Calteau and Priscillia Gourvil and Dominique Marie and Théophile Grébert and others},
year = {2018},
date = {2018-01-01},
journal = {Scientific reports},
volume = {8},
number = {1},
pages = {1–13},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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}
Gully, Djamel; Czernic, Pierre; Cruveiller, Stéphane; Mahé, Frédéric; Longin, Cyrille; Vallenet, David; François, Philippe; Nidelet, Sabine; Rialle, Stéphanie; Giraud, Eric; others,
Transcriptome profiles of Nod factor-independent symbiosis in the tropical legume Aeschynomene evenia Journal Article
In: Scientific reports, vol. 8, no. 1, pp. 1–12, 2018.
@article{gully2018transcriptome,
title = {Transcriptome profiles of Nod factor-independent symbiosis in the tropical legume Aeschynomene evenia},
author = {Djamel Gully and Pierre Czernic and Stéphane Cruveiller and Frédéric Mahé and Cyrille Longin and David Vallenet and Philippe François and Sabine Nidelet and Stéphanie Rialle and Eric Giraud and others},
year = {2018},
date = {2018-01-01},
journal = {Scientific reports},
volume = {8},
number = {1},
pages = {1–12},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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Duchemin, Wandrille; Gence, Guillaume; Chifolleau, Anne-Muriel Arigon; Arvestad, Lars; Bansal, Mukul S; Berry, Vincent; Boussau, Bastien; Chevenet, François; Comte, Nicolas; Davín, Adrián A; others,
RecPhyloXML: a format for reconciled gene trees Journal Article
In: Bioinformatics, vol. 34, no. 21, pp. 3646–3652, 2018.
@article{duchemin2018recphyloxml,
title = {RecPhyloXML: a format for reconciled gene trees},
author = {Wandrille Duchemin and Guillaume Gence and Anne-Muriel Arigon Chifolleau and Lars Arvestad and Mukul S Bansal and Vincent Berry and Bastien Boussau and François Chevenet and Nicolas Comte and Adrián A Davín and others},
year = {2018},
date = {2018-01-01},
journal = {Bioinformatics},
volume = {34},
number = {21},
pages = {3646–3652},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Monteil, Caroline L; Perrière, Guy; Menguy, Nicolas; Ginet, Nicolas; Alonso, Béatrice; Waisbord, Nicolas; Cruveiller, Stéphane; Pignol, David; Lefèvre, Christopher T
Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis Journal Article
In: Environmental microbiology, vol. 20, no. 12, pp. 4415–4430, 2018.
@article{monteil2018genomic,
title = {Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis},
author = {Caroline L Monteil and Guy Perrière and Nicolas Menguy and Nicolas Ginet and Béatrice Alonso and Nicolas Waisbord and Stéphane Cruveiller and David Pignol and Christopher T Lefèvre},
year = {2018},
date = {2018-01-01},
journal = {Environmental microbiology},
volume = {20},
number = {12},
pages = {4415–4430},
publisher = {John Wiley & Sons, Inc. Hoboken, USA},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
2017
Tran, Tam TT; Mangenot, Sophie; Magdelenat, Ghislaine; Payen, Emilie; Rouy, Zoe; Belahbib, Hassiba; Grail, Barry M; Johnson, D Barrie; Bonnefoy, Violaine; Talla, Emmanuel
Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes Journal Article
In: Frontiers in microbiology, vol. 8, pp. 1009, 2017.
@article{tran2017comparative,
title = {Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes},
author = {Tam TT Tran and Sophie Mangenot and Ghislaine Magdelenat and Emilie Payen and Zoe Rouy and Hassiba Belahbib and Barry M Grail and D Barrie Johnson and Violaine Bonnefoy and Emmanuel Talla},
year = {2017},
date = {2017-01-01},
journal = {Frontiers in microbiology},
volume = {8},
pages = {1009},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Pancrace, Claire; Gugger, Muriel; Calteau, Alexandra
Genomics of NRPS/PKS Biosynthetic Gene Clusters in Cyanobacteria Journal Article
In: Cyanobacteria: Omics and Manipulation. CAISTER ACADEMIC PRESS, vol. 32, pp. 55–74, 2017.
@article{pancrace2017genomics,
title = {Genomics of NRPS/PKS Biosynthetic Gene Clusters in Cyanobacteria},
author = {Claire Pancrace and Muriel Gugger and Alexandra Calteau},
year = {2017},
date = {2017-01-01},
journal = {Cyanobacteria: Omics and Manipulation. CAISTER ACADEMIC PRESS},
volume = {32},
pages = {55–74},
keywords = {},
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Rochat, Tatiana; Fujiwara-Nagata, Erina; Calvez, Ségolène; Dalsgaard, Inger; Madsen, Lone; Calteau, Alexandra; Lunazzi, Aurélie; Nicolas, Pierre; Wiklund, Tom; Bernardet, Jean-François; others,
Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme Journal Article
In: Frontiers in Microbiology, vol. 8, pp. 1752, 2017.
@article{rochat2017genomic,
title = {Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme},
author = {Tatiana Rochat and Erina Fujiwara-Nagata and Ségolène Calvez and Inger Dalsgaard and Lone Madsen and Alexandra Calteau and Aurélie Lunazzi and Pierre Nicolas and Tom Wiklund and Jean-François Bernardet and others},
year = {2017},
date = {2017-01-01},
journal = {Frontiers in Microbiology},
volume = {8},
pages = {1752},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Capela, Delphine; Marchetti, Marta; Clérissi, Camille; Perrier, Anthony; Guetta, Dorian; Gris, Carine; Valls, Marc; Jauneau, Alain; Cruveiller, Stéphane; Rocha, Eduardo PC; others,
Recruitment of a lineage-specific virulence regulatory pathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont Journal Article
In: Molecular biology and evolution, vol. 34, no. 10, pp. 2503–2521, 2017.
@article{capela2017recruitment,
title = {Recruitment of a lineage-specific virulence regulatory pathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont},
author = {Delphine Capela and Marta Marchetti and Camille Clérissi and Anthony Perrier and Dorian Guetta and Carine Gris and Marc Valls and Alain Jauneau and Stéphane Cruveiller and Eduardo PC Rocha and others},
year = {2017},
date = {2017-01-01},
journal = {Molecular biology and evolution},
volume = {34},
number = {10},
pages = {2503–2521},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Lassalle, Florent; Planel, Rémi; Penel, Simon; Chapulliot, David; Barbe, Valérie; Dubost, Audrey; Calteau, Alexandra; Vallenet, David; Mornico, Damien; Bigot, Thomas; others,
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium Journal Article
In: Genome biology and evolution, vol. 9, no. 12, pp. 3413–3431, 2017.
@article{lassalle2017ancestral,
title = {Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium},
author = {Florent Lassalle and Rémi Planel and Simon Penel and David Chapulliot and Valérie Barbe and Audrey Dubost and Alexandra Calteau and David Vallenet and Damien Mornico and Thomas Bigot and others},
year = {2017},
date = {2017-01-01},
journal = {Genome biology and evolution},
volume = {9},
number = {12},
pages = {3413–3431},
publisher = {Oxford University Press},
keywords = {},
pubstate = {published},
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}
Mouammine, Annabelle; Pages, Sylvie; Lanois, Anne; Gaudriault, Sophie; Jubelin, Gregory; Bonabaud, Maurine; Cruveiller, Stéphane; Dubois, Emeric; Roche, David; Legrand, Ludovic; others,
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence Journal Article
In: Scientific reports, vol. 7, no. 1, pp. 1–13, 2017.
@article{mouammine2017antimicrobial,
title = {An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence},
author = {Annabelle Mouammine and Sylvie Pages and Anne Lanois and Sophie Gaudriault and Gregory Jubelin and Maurine Bonabaud and Stéphane Cruveiller and Emeric Dubois and David Roche and Ludovic Legrand and others},
year = {2017},
date = {2017-01-01},
journal = {Scientific reports},
volume = {7},
number = {1},
pages = {1–13},
publisher = {Nature Publishing Group},
keywords = {},
pubstate = {published},
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}
Gully, Djamel; Teulet, Albin; Busset, Nicolas; Nouwen, Nico; Fardoux, Joël; Rouy, Zoe; Vallenet, David; Cruveiller, Stéphane; Giraud, Eric
Complete Genome Sequence of Bradyrhizobium sp. ORS285, a Photosynthetic Strain Able To Establish Nod Factor-Dependent or Nod Factor-Independent Symbiosis with Aeschynomene Legumes Journal Article
In: Genome announcements, vol. 5, no. 30, pp. e00421–17, 2017.
@article{gully2017complete,
title = {Complete Genome Sequence of Bradyrhizobium sp. ORS285, a Photosynthetic Strain Able To Establish Nod Factor-Dependent or Nod Factor-Independent Symbiosis with Aeschynomene Legumes},
author = {Djamel Gully and Albin Teulet and Nicolas Busset and Nico Nouwen and Joël Fardoux and Zoe Rouy and David Vallenet and Stéphane Cruveiller and Eric Giraud},
year = {2017},
date = {2017-01-01},
journal = {Genome announcements},
volume = {5},
number = {30},
pages = {e00421–17},
publisher = {Am Soc Microbiol},
keywords = {},
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Galia, Wessam; Leriche, Francoise; Cruveiller, Stéphane; Garnier, Cindy; Navratil, Vincent; Dubost, Audrey; Blanquet-Diot, Stéphanie; Thevenot-Sergentet, Delphine
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat Journal Article
In: BMC genomics, vol. 18, no. 1, pp. 1–18, 2017.
@article{galia2017strand,
title = {Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat},
author = {Wessam Galia and Francoise Leriche and Stéphane Cruveiller and Cindy Garnier and Vincent Navratil and Audrey Dubost and Stéphanie Blanquet-Diot and Delphine Thevenot-Sergentet},
year = {2017},
date = {2017-01-01},
journal = {BMC genomics},
volume = {18},
number = {1},
pages = {1–18},
publisher = {BioMed Central},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Payelleville, Amaury; Lanois, Anne; Gislard, Marie; Dubois, Emeric; Roche, David; Cruveiller, Stéphane; Givaudan, Alain; Brillard, Julien
DNA Adenine Methyltransferase (Dam) Overexpression Impairs Photorhabdus luminescens Motility and Virulence Journal Article
In: Frontiers in microbiology, vol. 8, pp. 1671, 2017.
@article{payelleville2017dna,
title = {DNA Adenine Methyltransferase (Dam) Overexpression Impairs Photorhabdus luminescens Motility and Virulence},
author = {Amaury Payelleville and Anne Lanois and Marie Gislard and Emeric Dubois and David Roche and Stéphane Cruveiller and Alain Givaudan and Julien Brillard},
year = {2017},
date = {2017-01-01},
journal = {Frontiers in microbiology},
volume = {8},
pages = {1671},
publisher = {Frontiers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Dupont, Hervé; Choinier, Pascaline; Roche, David; Adiba, Sandine; Sookdeb, Megan; Branger, Catherine; Denamur, Erick; Mammeri, Hedi
Structural alteration of OmpR as a source of ertapenem resistance in a CTX-M-15-producing Escherichia coli O25b: H4 sequence type 131 clinical isolate Journal Article
In: Antimicrobial agents and chemotherapy, vol. 61, no. 5, pp. e00014–17, 2017.
@article{dupont2017structural,
title = {Structural alteration of OmpR as a source of ertapenem resistance in a CTX-M-15-producing Escherichia coli O25b: H4 sequence type 131 clinical isolate},
author = {Hervé Dupont and Pascaline Choinier and David Roche and Sandine Adiba and Megan Sookdeb and Catherine Branger and Erick Denamur and Hedi Mammeri},
year = {2017},
date = {2017-01-01},
journal = {Antimicrobial agents and chemotherapy},
volume = {61},
number = {5},
pages = {e00014–17},
publisher = {Am Soc Microbiol},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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